Browse Element(s) Details

Os.39027.1.S1_at

Description

gb:BI809212
DB_XREF= gi:15856400
DB_XREF=F002F03
CLONE=F002F03
TID=Os.39027.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39027 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48750	4/11	Eukaryotic initiation factor 4A, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48720	Os.54979.1.S1_at	11/11	6	+	29476951..29479907	Cadmium/zinc-transporting ATPase 4, putative, expressed
LOC_Os06g48730	NA	NA	6	+	29496452..29497009	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g48740	OsAffx.28175.1.S1_s_at	11/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_x_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48750	Os.39027.1.S1_s_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.139.1.S1_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.39027.1.S1_at	4/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48760	Os.26461.1.S1_at	11/11	6	+	29507826..29514167	UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770	Os.11281.1.S2_at	11/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S1_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S3_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48780	Os.12291.1.S1_at	11/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780	OsAffx.28176.1.S1_at	9/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48790	OsAffx.5148.1.S1_x_at	11/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48790	OsAffx.19937.1.S1_at	1/11	6	+	29529047..29532722	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006413	biological_process	translational initiation
GO:0003743	molecular_function	translation initiation factor activity
GO:0008026	molecular_function	ATP-dependent helicase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.39027.1.S1_at--30--315	1	NONE	AATTCAGAAGACGTTAATGTTAAGG	NONE
Os.39027.1.S1_at--37--757	1	NONE	GGGCCTGATAAGGAATTGCTTTTTT	NONE
Os.39027.1.S1_at--507--293	1	NONE	AAGGAATTGCTTTTTTGTTCTGAAG	NONE
Os.39027.1.S1_at--1050--1025	1	NONE	TTTGTTCTGAAGGTATCACCTGTCT	NONE
Os.39027.1.S1_at--1058--671	1	NONE	GTTCTGAAGGTATCACCTGTCTTAT	NONE
Os.39027.1.S1_at--215--531	1	NONE	GAAGGTATCACCTGTCTTATCTCGG	NONE
Os.39027.1.S1_at--191--291	1	NONE	AAGGTATCACCTGTCTTATCTCGGG	NONE
Os.39027.1.S1_at--656--387	1	Chr06:29502819..29502844 (25 bp)	CTGTTTGCTCCTCGGTGCATAAGCC	LOC_Os06g48750
Os.39027.1.S1_at--711--685	1	Chr06:29502817..29502842 (25 bp)	GTTTGCTCCTCGGTGCATAAGCCAG	LOC_Os06g48750
Os.39027.1.S1_at--432--1027	1	Chr06:29502816..29502841 (25 bp)	TTTGCTCCTCGGTGCATAAGCCAGA	LOC_Os06g48750
Os.39027.1.S1_at--276--911	1	Chr06:29502814..29502839 (25 bp)	TGCTCCTCGGTGCATAAGCCAGATA	LOC_Os06g48750

Target Sequence

AATTCAGAAGACGTTAATGTTAAGGGGCCTGATAAGGAATTGCTTTTTTGTTCTGAAGGTATCACCTGTCTTATCTCGGG
GTGGGCGGGGATTGATAAAGTGGGGGTTCTGTTTTAAAAGTCACTGTGNTCGTAGACAATTTNCCAAATTTTTATGCCAT
GTTATGGGAATTTTTGTAGTTGCTAGGCTGTGCTATGTGCTGGTGAGGAGGGAGGAGTCTTTTACTTTTATTATATCTAT
TGTTAAAACTATGTATGACCGAATGATGTTATTTATTTGTNNCATGGTTGACTATTTGCCATATGTATTCTGCCACCGGT
CCTGCTACTGCCACTGGTATCTCGAGTGAAAACTGTTTGCTCCTCGGTGCATAAGCCAGATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis