Browse Element(s) Details


OsAffx.7023.1.S1_at

Description tigr:9639.m00600
TID=OsAffx.7023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0667010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06640Os.47463.1.S1_x_at6/1111+3219183..3225068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06640Os.14491.2.S1_x_at5/1111+3219183..3225068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06650Os.53123.1.S1_at11/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06650Os.52124.1.S1_at1/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06660Os.8626.1.S1_x_at2/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.3.S1_x_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.1.S1_a_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06670OsAffx.7023.1.S1_at10/1111+3241728..3245525expressed protein
LOC_Os11g06680Os.24268.1.S1_x_at11/1111+3246004..3250412expressed protein
LOC_Os11g06680Os.24268.2.S1_at7/1111+3246004..3250412expressed protein
LOC_Os11g06690OsAffx.30846.1.S1_at11/1111+3252302..3256841serine esterase family protein, expressed
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7023.1.S1_at--906--8211Chr11:3243867..3243891 (25 bp)
GGAATTTCAGACAGCACTCAGGGAT
LOC_Os11g06670
OsAffx.7023.1.S1_at--281--6311Chr11:3243889..3243913 (25 bp)
GATGAGCGCGCTAAGTTGAACTGTA
LOC_Os11g06670
OsAffx.7023.1.S1_at--867--8191Chr11:3244066..3244090 (25 bp)
GGAAGTCACTTGCTCACGATCGCTT
LOC_Os11g06670
OsAffx.7023.1.S1_at--224--10751NONE
TTGCACGGTGAATGCCTTGCGATCA
NONE
OsAffx.7023.1.S1_at--173--7011Chr11:3244830..3244951 (25 bp)
GTACTGCTGCTGGATTAAGACCTAT
LOC_Os11g06670
OsAffx.7023.1.S1_at--327--491Chr11:3244950..3244974 (25 bp)
ATCGGAGCAGTGGTCTTCATGCAAC
LOC_Os11g06670
OsAffx.7023.1.S1_at--1033--9611Chr11:3244966..3244990 (25 bp)
TCATGCAACGTGGTCTCCTGAAGAT
LOC_Os11g06670
OsAffx.7023.1.S1_at--37--1571Chr11:3245177..3245201 (25 bp)
AGCTCAAGTTCGTTTGCGCTAAGAA
LOC_Os11g06670
OsAffx.7023.1.S1_at--155--2611Chr11:3245213..3245237 (25 bp)
AACGCTTGGATCTCTGTGAACTCAT
LOC_Os11g06670
OsAffx.7023.1.S1_at--35--8991Chr11:3245229..3245253 (25 bp)
TGAACTCATGACTGGCCTGGAGGCT
LOC_Os11g06670
OsAffx.7023.1.S1_at--567--8291Chr11:3245300..3245324 (25 bp)
GGCTAGATACAATTCCCTTGGTTGC
LOC_Os11g06670
Target Sequence 
GGAATTTCAGACAGCACTCAGGGATGAGCGCGCTAAGTTGAACTGTATCACAAATCCTCTTGTATTTGAACAGCTGCAGC
AACTTGATGTTTGCAATCTGCTTTCTAGGGGGAAGTCACTTGCTCACGATCGCTTCGAAGCTGCAGGGAAGTTAATACAC
AAGCCATTTAGGATTCATCTCGGAAGAGGATTGCACGGTGAATGCCTTGCGATCAGAGCAGACGGGAATTCAAAATTAAG
CCATGAAATTGGCTTGGAGTTGAGCAAGATGAGTACTGCTGCTGGATTAAGACCTATCGGAGCAGTGGTCTTCATGCAAC
GTGGTCTCCTGAAGATCTGCTTGAGGACAACAGACAGTAGTACCAATACGGCAGAGATTGCTAAGGCATATGGTGGTGGT
GGAAAACCAAGCTCAAGTTCGTTTGCGCTAAGAATGGACGAATTCAACGCTTGGATCTCTGTGAACTCATGACTGGCCTG
GAGGCTGGAAGGGAGTTCTAAAAGAGTCATACAGAATTACAGGCAGGCACTGGGCTAGATACAATTCCCTTGGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis