Browse Element(s) Details


Os.52124.1.S1_at

Description gb:AK064906.1
DB_XREF= gi:32974924
TID=Os.52124.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000L21, full insert sequence.
FL= gb:AK064906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3554011/11expressed protein
LOC_Os11g066501/11transcription elongation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35510Os.26999.1.A1_at1/1111+20307686..20310846retrotransposon protein, putative, LINE subclass
LOC_Os11g35520OsAffx.22421.1.S1_at4/1111+20320991..20325023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520OsAffx.22421.4.S1_x_at3/1111+20320991..20325023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520Os.26886.3.S1_x_at2/1111+20320991..20325023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520OsAffx.22421.2.S1_at2/1111+20320991..20325023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520OsAffx.16244.1.S1_x_at1/1111+20320991..20325023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35520OsAffx.22421.3.S1_at1/1111+20320991..20325023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35530Os.27435.1.S1_x_at6/1111+20327826..20330239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35530Os.46334.1.S1_x_at4/1111+20327826..20330239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35540Os.52124.1.S1_at11/1111+20331233..20334555expressed protein
LOC_Os11g35550OsAffx.19176.1.S1_at11/1111+20335858..20338160Leucine Rich Repeat family protein
LOC_Os11g35560Os.45173.1.S1_x_at3/1111+20343592..20355602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35570NANA11+20356741..20357978retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35580OsAffx.7304.1.S1_at11/1111+20358548..20361570NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52124.1.S1_at--549--8611Chr11:20331759..20331783 (25 bp)
TGGTGCTACCACTAGAACGGGATCG
LOC_Os11g35540
Os.52124.1.S1_at--706--2571Chr11:20331744..20331768 (25 bp)
AACGGGATCGCTTATCTATGACGGG
LOC_Os11g35540
Os.52124.1.S1_at--6--1651Chr11:20331564..20331588 (25 bp)
ACCAGCGTAGTTAGGAGTCCGTCAC
LOC_Os11g35540
Os.52124.1.S1_at--870--1179Chr12:8041685..8041709 (25 bp)
AGTAGTCATCTCCATCGGGCATTTA
NONE
Os.52124.1.S1_at--571--10056Chr10:13176512..13176536 (25 bp)
TAGGTTTGACCCCACGTGTTGAGTC
NONE
Os.52124.1.S1_at--861--5699Chr12:8041773..8041797 (25 bp)
GACTTATCTCTATCGGGTGTATTCT
NONE
Os.52124.1.S1_at--495--87714Chr12:8041790..8041814 (25 bp)
TGTATTCTAAAAGCCCGTCACGGAT
NONE
Os.52124.1.S1_at--380--5714Chr12:6384803..6384827 (25 bp)
GACTAATCTCTAACGGGCAGGACTC
NONE
Os.52124.1.S1_at--678--60711Chr12:8041857..8041881 (25 bp)
GAGTTATCTCTTTCGGGCATTAGCT
NONE
Os.52124.1.S1_at--884--3558Chr12:8041874..8041898 (25 bp)
CATTAGCTAAATGCCCGTCAGGGAT
NONE
Os.52124.1.S1_at--14--22510Chr12:8041923..8041947 (25 bp)
AAATTTGTCTTTTTGGCTAGCCTCA
NONE
Target Sequence 
TGGTGCTACCACTAGAACGGGATCGCTTATCTATGACGGGCTGAAAGCATCATCATTGTCGGGTAAGGCCCCCGTCACTG
GGCAAAGGTCACTGATGTGAGGAAAAATCTCAATCGGGCAAAAGCCCGTCATGGATGGATGTTATCTCAATCGGGCCAAA
AACAAAGCCCGTCACAGATGAGTATGATCAGTCAAACCAGCGTAGTTAGGAGTCCGTCACGGATGACTAATCTCAATCGG
GCACACCACTAAGCCCGTCACGGATGAGTAGTCATCTCCATCGGGCATTTAGCCAGAGCCCGTCACCGATAGGTTTGACC
CCACGTGTTGAGTCAAACTAGTCCAATTCGGACGACTTATCTCTATCGGGTGTATTCTAAAAGCCCGTCACGGATGACTA
ATCTCTAACGGGCAGGACTCTATAGCCCGTCACGGATGAGTTATCTCTTTCGGGCATTAGCTAAATGCCCGTCAGGGATG
AGTTTAGAACCAAAAAAAATAAAATTTGTCTTTTTGGCTAGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis