Browse Element(s) Details


OsAffx.7304.1.S1_at

Description tigr:9639.m03201
TID=OsAffx.7304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3558011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35540Os.52124.1.S1_at11/1111+20331233..20334555expressed protein
LOC_Os11g35550OsAffx.19176.1.S1_at11/1111+20335858..20338160Leucine Rich Repeat family protein
LOC_Os11g35560Os.45173.1.S1_x_at3/1111+20343592..20355602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35570NANA11+20356741..20357978retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35580OsAffx.7304.1.S1_at11/1111+20358548..20361570NB-ARC domain containing protein
LOC_Os11g35590OsAffx.8479.1.S1_at10/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35590OsAffx.24279.1.S1_at2/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35590Os.7582.1.S1_at1/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35600NANA11+20375779..20376288hypothetical protein
LOC_Os11g35610NANA11+20383209..20383569hypothetical protein
LOC_Os11g35620OsAffx.19177.2.S1_s_at11/1111+20383829..20386333expressed protein
LOC_Os11g35620OsAffx.19177.2.S1_at11/1111+20383829..20386333expressed protein
LOC_Os11g35620OsAffx.19177.1.S1_at2/1111+20383829..20386333expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7304.1.S1_at--997--8211Chr11:20359109..20359133 (25 bp)
GGAATTTCTATCCTACTTAAGCATT
LOC_Os11g35580
OsAffx.7304.1.S1_at--550--10771Chr11:20359054..20359078 (25 bp)
TTGAGTAGTTTGAACCCACTGCCTC
LOC_Os11g35580
OsAffx.7304.1.S1_at--868--7691Chr11:20358962..20358986 (25 bp)
GGGTCAGAACCACTTGTATTCGATA
LOC_Os11g35580
OsAffx.7304.1.S1_at--625--6471Chr11:20358941..20358965 (25 bp)
GATACATCTATCTTGGTCCCAGCTG
LOC_Os11g35580
OsAffx.7304.1.S1_at--562--7871Chr11:20358816..20358840 (25 bp)
GGTTTCCTGCCCTCAAGGAGCTATA
LOC_Os11g35580
OsAffx.7304.1.S1_at--782--3571Chr11:20358791..20358815 (25 bp)
CATAGGAGACATGCCTCGCCTGAAA
LOC_Os11g35580
OsAffx.7304.1.S1_at--24--1491Chr11:20358753..20358777 (25 bp)
AGCAAGGTTCCATGGCAAGCCTGCA
LOC_Os11g35580
OsAffx.7304.1.S1_at--821--1531Chr11:20358703..20358727 (25 bp)
AGCATGATGGAGGTCCCGCTTGGCA
LOC_Os11g35580
OsAffx.7304.1.S1_at--624--10871Chr11:20358684..20358708 (25 bp)
TTGGCATCGAGTTCCTCATGTCAAC
LOC_Os11g35580
OsAffx.7304.1.S1_at--9--2271Chr11:20358655..20358679 (25 bp)
AAATCTTTGGGCTTCGCGGAGATCA
LOC_Os11g35580
OsAffx.7304.1.S1_at--762--4631Chr11:20358613..20358637 (25 bp)
GCGTTGCGCCAATGCTCTAGAATTA
LOC_Os11g35580
Target Sequence 
GGAATTTCTATCCTACTTAAGCATTGCAGCAAGTGATGAGAATGATATCCTCAATTTGAGTAGTTTGAACCCACTGCCTC
CAAACCTTGAAAAGCTAAGATTGCGCGGGAGATTGGCACAAGCAAACATGCTGTTGGGTGCAGCAGGGGGTCAGAACCAC
TTGTATTCGATACATCTATCTTGGTCCCAGCTGGTAGATGACCCACTGCCATCTCTGTCTCGGTGGTCGAATCTGACGGA
CCTTTTGTTGAACAGAGCGTACATTGGAGATGAGCTCGTCTTCCACCATGGGTGGTTTCCTGCCCTCAAGGAGCTATACA
TAGGAGACATGCCTCGCCTGAAACGGTTGGAGATTCAGCAAGGTTCCATGGCAAGCCTGCAGCAACTATATCTAGTCAAC
CTCAGTAGCATGATGGAGGTCCCGCTTGGCATCGAGTTCCTCATGTCAACTCTCAAATCTTTGGGCTTCGCGGAGATCAC
CCGGCAATTCCTCGCTGCGTTGCGCCAATGCTCTAGAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis