Browse Element(s) Details


OsAffx.24279.1.S1_at

Description tigr:9630.m01541
TID=OsAffx.24279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to wrky transcription factor 22 (wrky dna-binding protein 22)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g419702/11hypothetical protein
LOC_Os11g355902/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41900Os.4114.1.S2_at11/117+25098705..25102889expressed protein
LOC_Os07g41910OsAffx.16681.1.S1_at11/117+25104300..25104803C1-like domain containing protein
LOC_Os07g41920OsAffx.5598.1.S1_at11/117+25109024..25110796C1-like domain containing protein
LOC_Os07g41930OsAffx.5599.1.S1_at11/117+25116072..25116785C1-like domain containing protein
LOC_Os07g41940NANA7+25118121..25118336hypothetical protein
LOC_Os07g41950NANA7+25119746..25120120hypothetical protein
LOC_Os07g41960NANA7+25124777..25125302hypothetical protein
LOC_Os07g41970Os.7582.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41970OsAffx.24279.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41980OsAffx.5605.1.S1_at11/117+25129482..25130304C1-like domain containing protein
LOC_Os07g41990NANA7+25134701..25135843hypothetical protein
LOC_Os07g42000OsAffx.29757.3.S1_x_at11/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.3.S1_at11/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.1.S1_x_at8/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.4.S1_x_at5/117+25137433..25140270hypothetical protein
LOC_Os07g42010Os.10827.1.S1_x_at8/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42010Os.46055.2.S1_x_at5/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.7.S1_s_at11/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.1.S1_s_at11/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.2.S1_x_at6/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.5.S1_x_at1/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24279.1.S1_at--956--8631Chr02:9448867..9448891 (25 bp)
TGGGATCTCAATTCTCATCACTCAT
NONE
OsAffx.24279.1.S1_at--384--9611Chr02:9448881..9448905 (25 bp)
TCATCACTCATCACTCTTCTTGCAT
NONE
OsAffx.24279.1.S1_at--44--9591Chr02:9448898..9448922 (25 bp)
TCTTGCATCCCCAACTATTGATGGT
NONE
OsAffx.24279.1.S1_at--653--3591Chr02:9449550..9449574 (25 bp)
CATTGCGGATGTAGCCAGTCTCGGT
NONE
OsAffx.24279.1.S1_at--409--6171Chr02:9449575..9449599 (25 bp)
GATGGCAACGCGATTACGACCGAAG
NONE
OsAffx.24279.1.S1_at--360--8811Chr02:9449715..9449739 (25 bp)
TGTTGCTGCCTCTGGCGGCAATGAC
NONE
OsAffx.24279.1.S1_at--138--8231Chr02:9449731..9449755 (25 bp)
GGCAATGACTGCACTGTTGTGGCCT
NONE
OsAffx.24279.1.S1_at--330--10813Chr02:9449908..9449932 (25 bp)
TTGTCTCCGGGCAGTGGCATCCACG
NONE
OsAffx.24279.1.S1_at--33--5233Chr02:9449992..9450069 (25 bp)
GAAGTTTGGTTGAGTCCGTTTCTGT
NONE
OsAffx.24279.1.S1_at--485--5991Chr02:9450121..9450145 (25 bp)
GAGACCCAAGGTTGCAATTGTCATG
NONE
OsAffx.24279.1.S1_at--752--3171Chr02:9450136..9450160 (25 bp)
AATTGTCATGGCTTTGCCGCTGCTC
NONE
Target Sequence 
TGGGATCTCAATTCTCATCACTCATCACTCTTCTTGCATCCCCAACTATTGATGGTTGGAGACGACGGCGGCATTGCGGA
TGTAGCCAGTCTCGGTGATGGCAACGCGATTACGACCGAAGATGATGGCGGCGGCGCGGATCCAGTCCGCGGCGATGGCG
GTGGCGGCGGCTGCTCGGATGCGGTCCGTGGCGGCGGCAGCGGCTCGAATGTGGCCCGCGGCGGTGGCGGCTGCGCTGTT
GCTGCCTCTGGCGGCAATGACTGCACTGTTGTGGCCTACGTCGGCGTCGGTGGTGTTAGTCTGGGTGGCTGGATCTGGGA
TCCTTCTTCCTCTTTGTCTCCGGGCAGTGGCATCCACGCTGGGTGTGCCATTCGGGTTGAGCTCAAGCTCCTCAGATTCA
ATGGAGAACTCCGTGGTGAAGTTTGGTTGAGTCCGTTTCTGTGGAGGCGACCGAAGGGGATTAACGGTTCGTCAAGCGGT
CTGCATGCTAAAGGAGACCCAAGGTTGCAATTGTCATGGCTTTGCCGCTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis