Browse Element(s) Details


Os.4114.1.S2_at

Description gb:AK107534.1
DB_XREF= gi:32992743
TID=Os.4114.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0003O19.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H02, full insert sequence.
FL= gb:AK107534.1 gb:AK072719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4190011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41860OsAffx.5597.1.S1_at11/117+25075422..25075979C1-like domain containing protein
LOC_Os07g41870NANA7+25083044..25086349retrotransposon protein, putative, unclassified
LOC_Os07g41880NANA7+25086965..25093120retrotransposon protein, putative, unclassified
LOC_Os07g41890OsAffx.16680.1.S1_at11/117+25096011..25096568C1-like domain containing protein
LOC_Os07g41900Os.4114.1.S2_at11/117+25098705..25102889expressed protein
LOC_Os07g41910OsAffx.16681.1.S1_at11/117+25104300..25104803C1-like domain containing protein
LOC_Os07g41920OsAffx.5598.1.S1_at11/117+25109024..25110796C1-like domain containing protein
LOC_Os07g41930OsAffx.5599.1.S1_at11/117+25116072..25116785C1-like domain containing protein
LOC_Os07g41940NANA7+25118121..25118336hypothetical protein
LOC_Os07g41950NANA7+25119746..25120120hypothetical protein
LOC_Os07g41960NANA7+25124777..25125302hypothetical protein
LOC_Os07g41970Os.7582.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41970OsAffx.24279.1.S1_at2/117+25127203..25128015hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4114.1.S2_at--1007--831Chr07:25102236..25102260 (25 bp)
ATGGACTTCCGGCTGAAGCTTGCTA
LOC_Os07g41900
Os.4114.1.S2_at--837--6251Chr07:25102356..25102377 (22 bp)
GATGGGCTGTCGATAGACTCCTTAA
LOC_Os07g41900
Os.4114.1.S2_at--804--3311Chr07:25102392..25102416 (25 bp)
CACATCCCGTGCCTGAAGTTTGTAG
LOC_Os07g41900
Os.4114.1.S2_at--160--6011Chr07:25102436..25102460 (25 bp)
GAGAGCCTAGTCTCTGAGCCTCAAA
LOC_Os07g41900
Os.4114.1.S2_at--938--5231Chr07:25102486..25102510 (25 bp)
GAATACTTTTGCTGAGATACTCACG
LOC_Os07g41900
Os.4114.1.S2_at--188--7631Chr07:25102517..25102541 (25 bp)
GGGAAATACTCCGACACATTTGCAA
LOC_Os07g41900
Os.4114.1.S2_at--674--691Chr07:25102551..25102575 (25 bp)
ATGAGCTGACTGCAAGGCCGAGCAA
LOC_Os07g41900
Os.4114.1.S2_at--17--6991Chr07:25102672..25102696 (25 bp)
GTACCTGTTATGTTGAAAATGCCTT
LOC_Os07g41900
Os.4114.1.S2_at--891--5071Chr07:25102740..25102764 (25 bp)
GCAGCCTTGCAAGCTTACATTTTAA
LOC_Os07g41900
Os.4114.1.S2_at--106--2071Chr07:25102756..25102780 (25 bp)
ACATTTTAACGCCTTGATCTTCCTT
LOC_Os07g41900
Os.4114.1.S2_at--1012--1171Chr07:25102787..25102811 (25 bp)
AGTACTACACTTGCTTCCAGAGTTT
LOC_Os07g41900
Target Sequence 
ATGGACTTCCGGCTGAAGCTTGCTAGCGAGCGATGGGCTGTCGATAGACTCCTTAAGGTCGTGAAGACGCCACATCCCGT
GCCTGAAGTTTGTAGGAAAGCATCAATGATAGTGGAGAGCCTAGTCTCTGAGCCTCAAAACAGGATGCATCTCCTTGTCC
ATGAGAATACTTTTGCTGAGATACTCACGTCGGAAGGGAAATACTCCGACACATTTGCAAGGATTCTATATGAGCTGACT
GCAAGGCCGAGCAACAAAGTGACAGCAGGGCAAGCTATCTGGGGGAACATAAACTGATGCATCATTGTATTGTTAAAATC
TACTAGATAAGATGTACTTTAGTAGCTTAGGTACCTGTTATGTTGAAAATGCCTTGGGNTTTCTGACTGTATGTAACAAG
CTTTTAGCTGTATTTAGTTGCAGCCTTGCAAGCTTACATTTTAACGCCTTGATCTTCCTTTTCTGAAGTACTACACTTGC
TTCCAGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4114.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis