Browse Element(s) Details


OsAffx.5598.1.S1_at

Description tigr:9635.m04197
TID=OsAffx.5598.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4192011/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41870NANA7+25083044..25086349retrotransposon protein, putative, unclassified
LOC_Os07g41880NANA7+25086965..25093120retrotransposon protein, putative, unclassified
LOC_Os07g41890OsAffx.16680.1.S1_at11/117+25096011..25096568C1-like domain containing protein
LOC_Os07g41900Os.4114.1.S2_at11/117+25098705..25102889expressed protein
LOC_Os07g41910OsAffx.16681.1.S1_at11/117+25104300..25104803C1-like domain containing protein
LOC_Os07g41920OsAffx.5598.1.S1_at11/117+25109024..25110796C1-like domain containing protein
LOC_Os07g41930OsAffx.5599.1.S1_at11/117+25116072..25116785C1-like domain containing protein
LOC_Os07g41940NANA7+25118121..25118336hypothetical protein
LOC_Os07g41950NANA7+25119746..25120120hypothetical protein
LOC_Os07g41960NANA7+25124777..25125302hypothetical protein
LOC_Os07g41970Os.7582.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41970OsAffx.24279.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41980OsAffx.5605.1.S1_at11/117+25129482..25130304C1-like domain containing protein
LOC_Os07g41990NANA7+25134701..25135843hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5598.1.S1_at--578--1511Chr07:25110223..25110247 (25 bp)
AGCAGCGTCCGGCAATCAGCTGACC
LOC_Os07g41920
OsAffx.5598.1.S1_at--504--4651Chr07:25110227..25110251 (25 bp)
GCGTCCGGCAATCAGCTGACCGAGA
LOC_Os07g41920
OsAffx.5598.1.S1_at--542--1612Chr07:25110240..25110264 (25 bp)
AGCTGACCGAGAGCCGGACGCACTT
LOC_Os07g41920
OsAffx.5598.1.S1_at--1116--1791Chr07:25110279..25110303 (25 bp)
ACCCGCTTCTCAAGACACAGTACGG
LOC_Os07g41920
OsAffx.5598.1.S1_at--525--4851Chr07:25110283..25110307 (25 bp)
GCTTCTCAAGACACAGTACGGCGGC
LOC_Os07g41920
OsAffx.5598.1.S1_at--119--10571Chr07:25110285..25110309 (25 bp)
TTCTCAAGACACAGTACGGCGGCGG
LOC_Os07g41920
OsAffx.5598.1.S1_at--644--4752Chr07:25110381..25110405 (25 bp)
GCTGCGACCACTGCGACTTCGACAT
LOC_Os07g41920
OsAffx.5598.1.S1_at--27--3273Chr07:25110457..25110481 (25 bp)
CAACTTCTTCGGGCATCCGTGGTCG
LOC_Os07g41920
OsAffx.5598.1.S1_at--876--612Chr07:25110623..25110647 (25 bp)
ATGCTGCCGGGAGAGATCCGCAGCC
LOC_Os07g41920
OsAffx.5598.1.S1_at--228--9192Chr07:25110627..25110651 (25 bp)
TGCCGGGAGAGATCCGCAGCCCGCT
LOC_Os07g41920
OsAffx.5598.1.S1_at--1002--1312Chr07:25110720..25110744 (25 bp)
AGATGGCCCGGGTCTGCTCCGTCTG
LOC_Os07g41920
Target Sequence 
AGCAGCGTCCGGCAATCAGCTGACCGAGAGCCGGACGCACTTCGCCCATCCACAGCACCCGCTTCTCAAGACACAGTACG
GCGGCGGCGAGCGGCAGCCGANCAGCNGCCACGTCTGCCGCATCTGCGGGACTCGNNNNCGTCGTCNCCGGCGCCGGCTA
CCGCTGCGACCACTGCGACTTCGACATCCACGAGGCCNNNNNNTGCGCCNACTTCTTCCCGGAGAAAATGATNACNCCNC
CNCCCAACTTCTTCGGGCATCCGTGGTCGCACANNNANCTCNCGCTCAGACAGNTCACGGCGGNNNATGGNNCGNNNNCG
NNNACCCTGTGCCGGGGNCCCTTCCAGCACGGCCACCTCGCCTACCGCTGCGNCGCNGCNGNGNTGCGGGTNNNNTCGCC
GCGCACCCNGNTGNGCACGATGCTGCCGGGAGAGATCCGCAGCCCGCTCCACCGGNAGCACGCNCTCACCCACNCCGNGC
TCATNNNGNCNTCNTCCCNGNNCGGCCCGTGCACACCCGCCGAGATGGCCCGGGTCTGCTCCGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis