Browse Element(s) Details


OsAffx.5605.1.S1_at

Description tigr:9635.m04209
TID=OsAffx.5605.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DC1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4204011/11C1-like domain containing protein
LOC_Os07g4198011/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42010Os.10827.1.S1_x_at8/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42010Os.46055.2.S1_x_at5/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.7.S1_s_at11/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.1.S1_s_at11/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.2.S1_x_at6/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.5.S1_x_at1/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42030OsAffx.28867.1.S1_at11/117+25155222..25156295C1-like domain containing protein
LOC_Os07g42040OsAffx.5605.1.S1_at11/117+25165349..25166065C1-like domain containing protein
LOC_Os07g42050NANA7+25169740..25173087retrotransposon protein, putative, unclassified
LOC_Os07g42060NANA7+25173707..25179863retrotransposon protein, putative, unclassified
LOC_Os07g42070OsAffx.28867.2.S1_at11/117+25186186..25187086C1-like domain containing protein, expressed
LOC_Os07g42080Os.50913.1.S1_at10/117+25190621..25193220expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5605.1.S1_at--365--4252Chr07:25165608..25165632 (25 bp)
CCGGGTGGTGCGACCTGTGCCAGGG
LOC_Os07g42040
OsAffx.5605.1.S1_at--144--9432Chr07:25165653..25165677 (25 bp)
TCGTGTACCGCTGCGCGGAGTGCGC
LOC_Os07g42040
OsAffx.5605.1.S1_at--104--3972Chr07:25165668..25165692 (25 bp)
CGGAGTGCGCGTTCGACGTGCACCC
LOC_Os07g42040
OsAffx.5605.1.S1_at--654--4632Chr07:25165676..25165700 (25 bp)
GCGTTCGACGTGCACCCGCTGTGCA
LOC_Os07g42040
OsAffx.5605.1.S1_at--1079--5712Chr07:25165796..25165820 (25 bp)
GACTGCTCCATCTGGCATTACCGGT
LOC_Os07g42040
OsAffx.5605.1.S1_at--864--8792Chr07:25165833..25165857 (25 bp)
TGTTCATGCTCCACATCGGCTGCGT
LOC_Os07g42040
OsAffx.5605.1.S1_at--1060--3512Chr07:25165837..25165861 (25 bp)
CATGCTCCACATCGGCTGCGTTTCG
LOC_Os07g42040
OsAffx.5605.1.S1_at--1007--2092Chr07:25165845..25165869 (25 bp)
ACATCGGCTGCGTTTCGCCGGCCGG
LOC_Os07g42040
OsAffx.5605.1.S1_at--393--5012Chr07:25165941..25165965 (25 bp)
GCAGTCCCATCGTGAGGTTTCTGAT
LOC_Os07g42040
OsAffx.5605.1.S1_at--361--1152Chr07:25165943..25165967 (25 bp)
AGTCCCATCGTGAGGTTTCTGATCA
LOC_Os07g42040
OsAffx.5605.1.S1_at--822--9312Chr07:25165945..25165969 (25 bp)
TCCCATCGTGAGGTTTCTGATCATG
LOC_Os07g42040
Target Sequence 
CCGGGTGGTGCGACCTGTGCCAGGGNCNGATCCAGCCCGGNCGCCTCGTGTACCGCTGCGCGGAGTGCGCGTTCGACGTG
CACCCGCTGTGCACGCTGCTGCCGATGACCATCCACCCGGCCGCNNNNNNNNNNCGGGTGCCNCGGNNGCNACGTCCTCA
ACTTGGTCCCGGCGCGCGGGGAGTGCGCGGCGTGCNNCCNGGACTGCTCCATCTGGCATTACCGGTGCGGCCTATGNNTG
TTCATGCTCCACATCGGCTGCGTTTCGCCGGCCGGCGCCGGCGGTGCTCCAGCTGGTNCGAGGGGTTGGCCTGCCACCGG
NGGCGGCGGCGGCNNNTGGGNCGGCNNNGGTNGCAGTCCCATCGTGAGGTTTCTGATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis