Browse Element(s) Details


OsAffx.28867.2.S1_at

Description tigr:9635.m04212
TID=OsAffx.28867.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DC1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4207011/11C1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42040OsAffx.5605.1.S1_at11/117+25165349..25166065C1-like domain containing protein
LOC_Os07g42050NANA7+25169740..25173087retrotransposon protein, putative, unclassified
LOC_Os07g42060NANA7+25173707..25179863retrotransposon protein, putative, unclassified
LOC_Os07g42070OsAffx.28867.2.S1_at11/117+25186186..25187086C1-like domain containing protein, expressed
LOC_Os07g42080Os.50913.1.S1_at10/117+25190621..25193220expressed protein
LOC_Os07g42104Os.56038.1.S1_at11/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.28868.1.S1_at2/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.15592.1.A1_at1/117+25193856..25207300expressed protein
LOC_Os07g42130OsAffx.28868.1.S1_at11/117+25209576..25210261hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28867.2.S1_at--964--9171Chr07:25186535..25186559 (25 bp)
TGCCGCATGCCTCCTGAGAATAAAG
LOC_Os07g42070
OsAffx.28867.2.S1_at--894--6911Chr07:25186565..25186589 (25 bp)
GTATGTGACCTCTGCATGGAGCATT
LOC_Os07g42070
OsAffx.28867.2.S1_at--392--2491Chr07:25186703..25186727 (25 bp)
AACATGGTACCTTCTTCAGGGCACT
LOC_Os07g42070
OsAffx.28867.2.S1_at--627--5451Chr07:25186742..25186766 (25 bp)
GAACGTTTGCCCGTGTGGCACTACA
LOC_Os07g42070
OsAffx.28867.2.S1_at--297--8511Chr07:25186757..25186781 (25 bp)
TGGCACTACATCTGTGGCCCTTGTA
LOC_Os07g42070
OsAffx.28867.2.S1_at--210--7151Chr07:25186789..25186813 (25 bp)
GTCTTATCGGCTACATATCGGGTGC
LOC_Os07g42070
OsAffx.28867.2.S1_at--327--5511Chr07:25186867..25186891 (25 bp)
GAACAACAGTAGCAGCCGTGGCCAG
LOC_Os07g42070
OsAffx.28867.2.S1_at--421--8851Chr07:25186933..25186957 (25 bp)
TGATGCTCGGAACACTACTGCTGTT
LOC_Os07g42070
OsAffx.28867.2.S1_at--1022--1971Chr07:25186949..25186973 (25 bp)
ACTGCTGTTGTTGAGCGGAGCCGCA
LOC_Os07g42070
OsAffx.28867.2.S1_at--1095--9991Chr07:25186978..25187002 (25 bp)
TAGCGTCAGCAAGTTTCTCCTCAAG
LOC_Os07g42070
OsAffx.28867.2.S1_at--168--311Chr07:25187015..25187039 (25 bp)
ATAGCGATTGACCTAGCAACCGGCG
LOC_Os07g42070
Target Sequence 
TGCCGCATGCCTCCTGAGAATAAAGGATGGGTATGTGACCTCTGCATGGAGCATTGTCCCCCAGGAAATTTCGTGTACCG
CTGCATCCAGTGCAAGTTCGACGTGCACCCCCTGTGCACGTTGCTCCCTCAGACGATCCGCAGCCCGCTTCACCCACACC
ACGACCTCAACATGGTACCTTCTTCAGGGCACTGCAATGCTTGCCCTGAACGTTTGCCCGTGTGGCACTACATCTGTGGC
CCTTGTACGTCTCCGTCTTATCGGCTACATATCGGGTGCGTCTCTGGCGCGCCAAGCGGTGTCGGTCAGGGTAGCGGCAG
CACCACCAACCAGAACAACAGTAGCAGCCGTGGCCAGGGCACCGGCAACACCAGCAGCGGTGCCAACCAAACTACCAGTG
ATGCTCGGAACACTACTGCTGTTGTTGAGCGGAGCCGCAGCACTAGCGTCAGCAAGTTTCTCCTCAAGAAAAGCTTCATG
ATAGCGATTGACCTAGCAACCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28867.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis