Browse Element(s) Details


Os.56038.1.S1_at

Description gb:AK109158.1
DB_XREF= gi:32994367
TID=Os.56038.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G05, full insert sequence.
FL= gb:AK109158.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4210411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42050NANA7+25169740..25173087retrotransposon protein, putative, unclassified
LOC_Os07g42060NANA7+25173707..25179863retrotransposon protein, putative, unclassified
LOC_Os07g42070OsAffx.28867.2.S1_at11/117+25186186..25187086C1-like domain containing protein, expressed
LOC_Os07g42080Os.50913.1.S1_at10/117+25190621..25193220expressed protein
LOC_Os07g42104Os.56038.1.S1_at11/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.28868.1.S1_at2/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.15592.1.A1_at1/117+25193856..25207300expressed protein
LOC_Os07g42130OsAffx.28868.1.S1_at11/117+25209576..25210261hypothetical protein
LOC_Os07g42140Os.50176.1.S1_at11/117+25212849..25214925hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42150OsAffx.28869.1.S1_at11/117+25217814..25221358Transcription initiation factor IID, 31kD subunit family protein
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56038.1.S1_at--683--4571Chr07:25206785..25206809 (25 bp)
GCGCGGAATGCGAAGCCCTTTAGCT
LOC_Os07g42104
Os.56038.1.S1_at--160--9951Chr07:25206805..25206829 (25 bp)
TAGCTGCCCCTACCGAATTAGCGGA
LOC_Os07g42104
Os.56038.1.S1_at--1038--4591Chr07:25206851..25206875 (25 bp)
GCGACTTGGTATCACTATGGCTGAT
LOC_Os07g42104
Os.56038.1.S1_at--945--5731Chr07:25206882..25206906 (25 bp)
GACTGGGATGAGTACCTTGATCACA
LOC_Os07g42104
Os.56038.1.S1_at--905--4631Chr07:25206915..25206939 (25 bp)
GCGATTGCTCGGTATATGGCTACTA
LOC_Os07g42104
Os.56038.1.S1_at--840--1271Chr07:25206951..25206975 (25 bp)
AGATCTTTTGTTTTGGAAGCCAGCA
LOC_Os07g42104
Os.56038.1.S1_at--969--7411Chr07:25206993..25207017 (25 bp)
GTGTTCCCGTGATAAATGCTGCTTT
LOC_Os07g42104
Os.56038.1.S1_at--332--9991Chr07:25207031..25207055 (25 bp)
TAGCCTTTCGATATCCAATTGGTGA
LOC_Os07g42104
Os.56038.1.S1_at--1116--3151Chr07:25207057..25207081 (25 bp)
AATTGTTCTGGCTATTGGTCGTTAT
LOC_Os07g42104
Os.56038.1.S1_at--130--2191Chr07:25207204..25207228 (25 bp)
ACACTTGTGCTGTTTGGATTTTGCC
LOC_Os07g42104
Os.56038.1.S1_at--881--7931Chr07:25207219..25207243 (25 bp)
GGATTTTGCCTCAGTCTTTGTAGTA
LOC_Os07g42104
Target Sequence 
GCGCGGAATGCGAAGCCCTTTAGCTGCCCCTACCGAATTAGCGGACTACACCGATGAAGAGGTTGAGCGACTTGGTATCA
CTATGGCTGATGATTCAGACTGGGATGAGTACCTTGATCACATCCACACTGCGATTGCTCGGTATATGGCTACTATAAAG
AGGATCAGATCTTTTGTTTTGGAAGCCAGCAATTATATTTTAATCTATGTGTTCCCGTGATAAATGCTGCTTTAGAATTA
GCGAATTAGCCTTTCGATATCCAATTGGTGAAAATTGTTCTGGCTATTGGTCGTTATATTCGAGAAGCAGATACCAACTA
GTTTGATCTGATATTCTGGCTAGTTGTAAGTCATCATTGCACAGCAATCATAGGCTCATAGCGAAGTAGAAACTGTACAG
TAATTAGTAGATGTGAATAACACTTGTGCTGTTTGGATTTTGCCTCAGTCTTTGTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis