Browse Element(s) Details


OsAffx.15592.1.A1_at

Description tigr:9634.m02383
TID=OsAffx.15592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g421041/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42050NANA7+25169740..25173087retrotransposon protein, putative, unclassified
LOC_Os07g42060NANA7+25173707..25179863retrotransposon protein, putative, unclassified
LOC_Os07g42070OsAffx.28867.2.S1_at11/117+25186186..25187086C1-like domain containing protein, expressed
LOC_Os07g42080Os.50913.1.S1_at10/117+25190621..25193220expressed protein
LOC_Os07g42104Os.56038.1.S1_at11/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.28868.1.S1_at2/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.15592.1.A1_at1/117+25193856..25207300expressed protein
LOC_Os07g42130OsAffx.28868.1.S1_at11/117+25209576..25210261hypothetical protein
LOC_Os07g42140Os.50176.1.S1_at11/117+25212849..25214925hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42150OsAffx.28869.1.S1_at11/117+25217814..25221358Transcription initiation factor IID, 31kD subunit family protein
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15592.1.A1_at--734--3894Chr10:6873757..6873781 (25 bp)
CTGGGACTGCACTTGCGGATAGACT
NONE
OsAffx.15592.1.A1_at--283--3836Chr10:6873763..6874131 (25 bp)
CTGCACTTGCGGATAGACTTGAGGT
NONE
OsAffx.15592.1.A1_at--167--5691Chr06:14111682..14111706 (25 bp)
GACTTGAGGTGGGACATATCCTGTC
NONE
OsAffx.15592.1.A1_at--1123--1032Chr06:14111688..14111712 (25 bp)
AGGTGGGACATATCCTGTCGAATAC
NONE
OsAffx.15592.1.A1_at--775--4918Chr11:15493671..15493829 (25 bp)
GCTTCGTACGCTTGCTGCTGTTCTT
NONE
OsAffx.15592.1.A1_at--313--3658Chr10:6873933..6873957 (25 bp)
CTTCGGCTTGTGTTTCAGGGTCGGA
NONE
OsAffx.15592.1.A1_at--187--9634Chr06:14111851..14111875 (25 bp)
TCAGGGTCGGAGTTGACTTGGACTT
NONE
OsAffx.15592.1.A1_at--635--8034Chr06:14111859..14111883 (25 bp)
GGAGTTGACTTGGACTTGCATGGCA
NONE
OsAffx.15592.1.A1_at--234--2074Chr10:6873968..6874255 (25 bp)
ACTTGCATGGCAGGGAGCGCCGCTT
NONE
OsAffx.15592.1.A1_at--1122--2072Chr06:14112013..14112037 (25 bp)
ACATTCGGCGCCTGCTCAGAGGTGG
NONE
OsAffx.15592.1.A1_at--1126--5311Chr06:14112073..14112097 (25 bp)
GAAGTGGATGGTGCTCCTCCGACTT
NONE
Target Sequence 
CTGGGACTGCACTTGCGGATAGACTTGAGGTGGGACATATCCTGTCGAATACTGGAGGATTGGTGCTGAAGCGACCTTGG
ATCGCCTTGCCGCTTCGTACGCTTGCTGCTGTTCTTGCATTTGGCGAAGCATGTCTTGGAGTCGTGCCATGTTCTGCCGC
ATGGCTTCCATATCGGCTTCGGCTTGTGTTTCAGGGTCGGAGTTGACTTGGACTTGCATGGCAGGGAGCGCCGCTTGGGC
CGCTGCTGGCTGTGAGGGAACGGCCTGGGGCACCAGCAGCTGACTTGTCGAAAGGACCTCCGCCCTGGTCTGGAGTGCCC
TTGCCACTGCGGCTGCCTTCGCCACGTCGTCCACATTCGGCGCCTGCTCAGAGGTGGCGGGGGCCGAAGGTAGCAGCAAT
GGTGCCGGCACCGAAGTGGATGGTGCTCCTCCGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15592.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis