Browse Element(s) Details


OsAffx.28869.1.S1_at

Description tigr:9635.m04220
TID=OsAffx.28869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4215011/11Transcription initiation factor IID, 31kD subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42080Os.50913.1.S1_at10/117+25190621..25193220expressed protein
LOC_Os07g42104Os.56038.1.S1_at11/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.28868.1.S1_at2/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.15592.1.A1_at1/117+25193856..25207300expressed protein
LOC_Os07g42130OsAffx.28868.1.S1_at11/117+25209576..25210261hypothetical protein
LOC_Os07g42140Os.50176.1.S1_at11/117+25212849..25214925hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42150OsAffx.28869.1.S1_at11/117+25217814..25221358Transcription initiation factor IID, 31kD subunit family protein
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed
LOC_Os07g42170Os.4720.1.S1_at11/117+25234988..2523575060S ribosomal protein L27a-2, putative, expressed
LOC_Os07g42180Os.23210.1.S1_at11/117+25238070..25246771PAUSED, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28869.1.S1_at--812--7951Chr07:25218353..25218377 (25 bp)
GGATCAGTGTCTCTTCAACATCATC
LOC_Os07g42150
OsAffx.28869.1.S1_at--6--2371Chr07:25218309..25218333 (25 bp)
AAACCACCTATTTGTTCATCAAGTA
LOC_Os07g42150
OsAffx.28869.1.S1_at--525--10031Chr07:25218286..25218310 (25 bp)
TAGAGCTGACGCTTGATCAAATTGA
LOC_Os07g42150
OsAffx.28869.1.S1_at--118--671Chr07:25218238..25218262 (25 bp)
ATGACAATGTTGACTCTCCTAATTT
LOC_Os07g42150
OsAffx.28869.1.S1_at--220--2811Chr07:25218202..25218226 (25 bp)
AAGATCCTTCTCGATCGGTGTCTTT
LOC_Os07g42150
OsAffx.28869.1.S1_at--1017--3971Chr07:25218187..25218211 (25 bp)
CGGTGTCTTTTCCACATTATCAGGT
LOC_Os07g42150
OsAffx.28869.1.S1_at--748--9751Chr07:25218078..25218102 (25 bp)
TAATGATAATGTCGCCTCTCTTGAT
LOC_Os07g42150
OsAffx.28869.1.S1_at--116--7691Chr07:25217986..25218010 (25 bp)
GGGTAGAACCGACACTTGATCAAGT
LOC_Os07g42150
OsAffx.28869.1.S1_at--348--8811Chr07:25217942..25217966 (25 bp)
TGTTCCAGTGACAATGTTGCCTCTC
LOC_Os07g42150
OsAffx.28869.1.S1_at--267--6691Chr07:25217927..25217951 (25 bp)
GTTGCCTCTCCTGATTCTAATTATG
LOC_Os07g42150
OsAffx.28869.1.S1_at--312--5311Chr07:25217862..25217886 (25 bp)
GAAGGTTTCTCAACTCAATACTTTG
LOC_Os07g42150
Target Sequence 
GGATCAGTGTCTCTTCAACATCATCAGGATATGTCATTGAACCAAAACCACCTATTTGTTCATCAAGTAGAGCTGACGCT
TGATCAAATTGAGGAAATTAAAGATGATGGTTCTAATGACAATGTTGACTCTCCTAATTTCAATTGTGTCCAAGATCCTT
CTCGATCGGTGTCTTTTCCACATTATCAGGTTATGCCATTGAACCAAAACCATCTATCTTTTCATCAAGTAGAGCCGATG
CTTGATCAAGTTGAGGAAATTAAAGATGATAGTTCTAATGATAATGTCGCCTCTCTTGATTCCAATTGTATCCAAGATCC
ACATTATCAGGACATGTTATTGAACCAAGACCACCTATCTGTCCGTGGGGTAGAACCGACACTTGATCAAGTTGAGGAAA
TTGAAGATGATTGTTCCAGTGACAATGTTGCCTCTCCTGATTCTAATTATGACAAAGAGAAGAATGACAGTAACAAACAG
AAGCCTTCTAAGAAGGTTTCTCAACTCAATACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis