Browse Element(s) Details


Os.50176.1.S1_at

Description gb:AK119994.1
DB_XREF= gi:37989617
TID=Os.50176.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-G10, full insert sequence.
FL= gb:AK119994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4214011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42080Os.50913.1.S1_at10/117+25190621..25193220expressed protein
LOC_Os07g42104Os.56038.1.S1_at11/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.28868.1.S1_at2/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.15592.1.A1_at1/117+25193856..25207300expressed protein
LOC_Os07g42130OsAffx.28868.1.S1_at11/117+25209576..25210261hypothetical protein
LOC_Os07g42140Os.50176.1.S1_at11/117+25212849..25214925hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42150OsAffx.28869.1.S1_at11/117+25217814..25221358Transcription initiation factor IID, 31kD subunit family protein
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed
LOC_Os07g42170Os.4720.1.S1_at11/117+25234988..2523575060S ribosomal protein L27a-2, putative, expressed
LOC_Os07g42180Os.23210.1.S1_at11/117+25238070..25246771PAUSED, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50176.1.S1_at--976--7211Chr07:25214344..25214368 (25 bp)
GTCGAGGACGTGATGCTCCCGCGCA
LOC_Os07g42140
Os.50176.1.S1_at--127--2351Chr07:25213408..25213432 (25 bp)
AAAGAAAAATTCCAGCTCACTCCAC
LOC_Os07g42140
Os.50176.1.S1_at--731--5931Chr07:25213258..25213282 (25 bp)
GAGCATGATCAGATATTTCCCATAG
LOC_Os07g42140
Os.50176.1.S1_at--98--8151Chr07:25213034..25213058 (25 bp)
GGAAATCATAAAGAACACCGGCCAT
LOC_Os07g42140
Os.50176.1.S1_at--904--2152Chr07:25213020..25213044 (25 bp)
ACACCGGCCATATGCCACAGGAGGA
LOC_Os07g42140
Os.50176.1.S1_at--336--5552Chr07:25212989..25213013 (25 bp)
GAAACGGTTCAATGAGGCCCTCCTG
LOC_Os07g42140
Os.50176.1.S1_at--413--8971Chr07:25212966..25212990 (25 bp)
TGAACTTCTTGTTACCAGCTCCAAA
LOC_Os07g42140
Os.50176.1.S1_at--1116--1711Chr07:25212953..25212977 (25 bp)
ACCAGCTCCAAATTCGTCGTTGTGA
LOC_Os07g42140
Os.50176.1.S1_at--310--9211Chr07:25212916..25212940 (25 bp)
TGCCAACTTCTTGAGCGGCTATCTG
LOC_Os07g42140
Os.50176.1.S1_at--260--5891Chr07:25212904..25212928 (25 bp)
GAGCGGCTATCTGTGGAGAGTACTT
LOC_Os07g42140
Os.50176.1.S1_at--1067--9871Chr07:25212868..25212892 (25 bp)
TACATTGTCTTATGGCACAGGGTAA
LOC_Os07g42140
Target Sequence 
GTCGAGGACGTGATGCTCCCGCGCACGCCGGAGCGGATGCGCCGGCTGCTCGGCCTCGCCTACCACCGTCCCCGCCGCTT
CAGCTTCACCCCGGCCTTCGTGCTCCGGGACCTCGCCCAGTATCTCTACACCGACAAAATAGAAGAAAAGAAAGAGCTGA
TCAAGGGGATAACACTGGGGGACAAAGAAAAATTCCAGCTCACTCCACTTCCTCAGGAAGTTCTTGTATTATGGGGAGAG
CATGATCAGATATTTCCCATAGAGAAGGCATTTGAAGTAGCAAGGCAACTTGGTGCAAATGCTAGGTTGGAAATCATAAA
GAACACCGGCCATATGCCACAGGAGGAGGACCCGAAACGGTTCAATGAGGCCCTCCTGAACTTCTTGTTACCAGCTCCAA
ATTCGTCGTTGTGATGGGGATATCAATGCCAACTTCTTGAGCGGCTATCTGTGGAGAGTACTTGATCTAAGTTGTACATT
GTCTTATGGCACAGGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis