Browse Element(s) Details


OsAffx.28868.1.S1_at

Description tigr:9635.m04218
TID=OsAffx.28868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4213011/11hypothetical protein
LOC_Os07g421042/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42070OsAffx.28867.2.S1_at11/117+25186186..25187086C1-like domain containing protein, expressed
LOC_Os07g42080Os.50913.1.S1_at10/117+25190621..25193220expressed protein
LOC_Os07g42104Os.56038.1.S1_at11/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.28868.1.S1_at2/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.15592.1.A1_at1/117+25193856..25207300expressed protein
LOC_Os07g42130OsAffx.28868.1.S1_at11/117+25209576..25210261hypothetical protein
LOC_Os07g42140Os.50176.1.S1_at11/117+25212849..25214925hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42150OsAffx.28869.1.S1_at11/117+25217814..25221358Transcription initiation factor IID, 31kD subunit family protein
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed
LOC_Os07g42170Os.4720.1.S1_at11/117+25234988..2523575060S ribosomal protein L27a-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28868.1.S1_at--279--6451Chr07:25209716..25209740 (25 bp)
GATCAAAATTTTCTTCACTCGCGCG
LOC_Os07g42130
OsAffx.28868.1.S1_at--534--3131Chr07:25209722..25209746 (25 bp)
AATTTTCTTCACTCGCGCGCAGCGG
LOC_Os07g42130
OsAffx.28868.1.S1_at--1072--452Chr07:25209762..25209786 (25 bp)
ATCTCCGCGCAGAGGGATCTCGGCG
LOC_Os07g42130
OsAffx.28868.1.S1_at--244--4231Chr07:25209791..25209815 (25 bp)
CCGTGGCGCAGTGAAAGGTGTTCTT
LOC_Os07g42130
OsAffx.28868.1.S1_at--93--1131Chr07:25209800..25209824 (25 bp)
AGTGAAAGGTGTTCTTGCCTTGACG
LOC_Os07g42130
OsAffx.28868.1.S1_at--879--10472Chr07:25210026..25210050 (25 bp)
TTAATTGGAGGGACGTGATCGAGCC
LOC_Os07g42130
OsAffx.28868.1.S1_at--1010--2791Chr07:25210077..25210101 (25 bp)
AAGATGGCACATTTGCCTATCTTGA
LOC_Os07g42130
OsAffx.28868.1.S1_at--965--3291Chr07:25210084..25210108 (25 bp)
CACATTTGCCTATCTTGACTACATC
LOC_Os07g42130
OsAffx.28868.1.S1_at--479--8951Chr07:25210099..25210123 (25 bp)
TGACTACATCGATTACCTCAACTCC
LOC_Os07g42130
OsAffx.28868.1.S1_at--1146--9931Chr07:25210112..25210136 (25 bp)
TACCTCAACTCCCAAATGAACCATG
LOC_Os07g42130
OsAffx.28868.1.S1_at--886--671Chr07:25210152..25210176 (25 bp)
ATGACAAGAAGTGTTCCGACAAGGA
LOC_Os07g42130
Target Sequence 
GATCAAAATTTTCTTCACTCGCGCGCAGCGGCTCACGCTCCCGTCCATCTCCGCGCAGAGGGATCTCGGCGTCGGCCGTG
GCGCAGTGAAAGGTGTTCTTGCCTTGACGAGTTCGTTGGCTGGATTGCTGCTCGGATTCCTCTATTTCAAGCAAGATAGA
GATGACTCAGCAGCCGGGGAGGAGACCAGGAAGGAGGAGGAGGAGGTGACTGTTAATTGGAGGGACGTGATCGAGCCATC
CGTCATGGCAAGGTTCACCAGGAAAGATGGCACATTTGCCTATCTTGACTACATCGATTACCTCAACTCCCAAATGAACC
ATGGGGGGAAACCACTCTATGACAAGAAGTGTTCCGACAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis