Browse Element(s) Details


Os.23210.1.S1_at

Description gb:AK106898.1
DB_XREF= gi:32992107
TID=Os.23210.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H04, full insert sequence.
FL= gb:AK059512.1 gb:AK099895.1 gb:AK067398.1 gb:AK106898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4218011/11PAUSED, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42140Os.50176.1.S1_at11/117+25212849..25214925hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42150OsAffx.28869.1.S1_at11/117+25217814..25221358Transcription initiation factor IID, 31kD subunit family protein
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed
LOC_Os07g42170Os.4720.1.S1_at11/117+25234988..2523575060S ribosomal protein L27a-2, putative, expressed
LOC_Os07g42180Os.23210.1.S1_at11/117+25238070..25246771PAUSED, putative, expressed
LOC_Os07g42190OsAffx.5606.1.S1_at11/117+25249332..25251771hypothetical protein
LOC_Os07g42200Os.53190.1.S1_at11/117+25253371..25258266Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os07g42210Os.35344.18.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210Os.35344.3.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_at7/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_x_at5/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42220OsAffx.16682.1.S1_at11/117+25271689..25272287expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006409biological_processtRNA export from nucleus
GO:0009908biological_processflower development
GO:0010014biological_processmeristem initiation
GO:0000049molecular_functiontRNA binding
GO:0015932molecular_functionnucleobase, nucleoside, nucleotide and nucleic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23210.1.S1_at--707--9531Chr07:25246200..25246224 (25 bp)
TCTTTAATATAGTTGCGTCGTTCGC
LOC_Os07g42180
Os.23210.1.S1_at--859--6771Chr07:25246253..25246277 (25 bp)
GTTACCCTGATTATCCAGTGACAGA
LOC_Os07g42180
Os.23210.1.S1_at--1067--1212Chr07:25246308..25246332 (25 bp)
AGTTCAACTTTGATCTCTTCTCCTT
LOC_Os07g42180
Os.23210.1.S1_at--127--5591Chr07:25246388..25246412 (25 bp)
GAAATCTTTCATCCTTGTTTTTGCC
LOC_Os07g42180
Os.23210.1.S1_at--185--10391Chr07:25246406..25246430 (25 bp)
TTTTGCCCATTCTGTGACTTTCGTG
LOC_Os07g42180
Os.23210.1.S1_at--305--10731Chr07:25246432..25246456 (25 bp)
TTGTTCGGCTTCCTTTCAGAATTTG
LOC_Os07g42180
Os.23210.1.S1_at--1124--6091Chr07:25246489..25246513 (25 bp)
GAGTCTAGTCACTGTTACTTGTTAG
LOC_Os07g42180
Os.23210.1.S1_at--262--7691Chr07:25246559..25246583 (25 bp)
GGGTTTGATCATATCTTCTGTTCTT
LOC_Os07g42180
Os.23210.1.S1_at--524--6731Chr07:25246578..25246602 (25 bp)
GTTCTTGTTCTTGTGATCCAACTAT
LOC_Os07g42180
Os.23210.1.S1_at--161--8951Chr07:25246673..25246697 (25 bp)
TGACTGCACATAGAGGCCCATATTT
LOC_Os07g42180
Os.23210.1.S1_at--772--8971Chr07:25246744..25246768 (25 bp)
TGAAAATTTGCTTGCCTGCTGTTGG
LOC_Os07g42180
Target Sequence 
TCTTTAATATAGTTGCGTCGTTCGCATTAATAAGTTTCCNGTGGTCACNTTCTNGTTACCCTGATTATCCAGTGACAGAA
GAGGCATGNTANGCTGANTGCAATGTAAGAGTTCAACTTTGATCTCTTCTCCTTTNGAGGTAGTGGAAATTTTCTTTTTA
CCCATAGAGGTCGGTATTTTTGAACGGTCGAAATCTTTCATCCTTGTTTTTGCCCATTCTGTGACTTTCGTGCTTGTTCG
GCTTCCTTTCAGAATTTGGATAAATTTGCTTTGGATTAGACCACGTAACAGAGTCTAGTCACTGTTACTTGTTAGGCAGG
ATGGATATGGCTGTGAAGTGAAGGCCAGGCCATCAAAGTTGGGTTTGATCATATCTTCTGTTCTTGTTCTTGTGATCCAA
CTATCCAAGGACTTGGCCAGGAGCACATCAGCGTGCTAGAGACGGACATAACGATATTGATTGTCTAGCTTATATGACTG
CACATAGAGGCCCATATTTGTAGGTTGACAAGATGTTTATGGCTTTATGGCCATATGACTTTTGTTGAAAATTTGCTTGC
CTGCTGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis