Browse Element(s) Details


OsAffx.16680.1.S1_at

Description tigr:9635.m04194
TID=OsAffx.16680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4189011/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41860OsAffx.5597.1.S1_at11/117+25075422..25075979C1-like domain containing protein
LOC_Os07g41870NANA7+25083044..25086349retrotransposon protein, putative, unclassified
LOC_Os07g41880NANA7+25086965..25093120retrotransposon protein, putative, unclassified
LOC_Os07g41890OsAffx.16680.1.S1_at11/117+25096011..25096568C1-like domain containing protein
LOC_Os07g41900Os.4114.1.S2_at11/117+25098705..25102889expressed protein
LOC_Os07g41910OsAffx.16681.1.S1_at11/117+25104300..25104803C1-like domain containing protein
LOC_Os07g41920OsAffx.5598.1.S1_at11/117+25109024..25110796C1-like domain containing protein
LOC_Os07g41930OsAffx.5599.1.S1_at11/117+25116072..25116785C1-like domain containing protein
LOC_Os07g41940NANA7+25118121..25118336hypothetical protein
LOC_Os07g41950NANA7+25119746..25120120hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16680.1.S1_at--389--5951Chr07:25096041..25096065 (25 bp)
GAGCACTTGGTAACCGAGCACCACT
LOC_Os07g41890
OsAffx.16680.1.S1_at--644--7831Chr07:25096049..25096073 (25 bp)
GGTAACCGAGCACCACTACGGCGAG
LOC_Os07g41890
OsAffx.16680.1.S1_at--20--5951Chr07:25096146..25096170 (25 bp)
GAGCACGGCGAGTGCGACTTCCACG
LOC_Os07g41890
OsAffx.16680.1.S1_at--374--1071Chr07:25096156..25096180 (25 bp)
AGTGCGACTTCCACGTCCACCGGAG
LOC_Os07g41890
OsAffx.16680.1.S1_at--1113--1651Chr07:25096257..25096281 (25 bp)
AGCCGGTGGTGCAACGTCTGCGACG
LOC_Os07g41890
OsAffx.16680.1.S1_at--606--1811Chr07:25096339..25096363 (25 bp)
ACCCTCGGTGCACGCCTGTGTTGGA
LOC_Os07g41890
OsAffx.16680.1.S1_at--121--6991Chr07:25096428..25096452 (25 bp)
GTACGCGCCGCGAAGGTTGCTCTCA
LOC_Os07g41890
OsAffx.16680.1.S1_at--672--5311Chr07:25096439..25096463 (25 bp)
GAAGGTTGCTCTCAAGATCGGCGTC
LOC_Os07g41890
OsAffx.16680.1.S1_at--619--10711Chr07:25096444..25096468 (25 bp)
TTGCTCTCAAGATCGGCGTCGCCGT
LOC_Os07g41890
OsAffx.16680.1.S1_at--518--5811Chr07:25096475..25096499 (25 bp)
GACCGCGGTGGATGTCGGAACGACC
LOC_Os07g41890
OsAffx.16680.1.S1_at--241--1771Chr07:25096512..25096536 (25 bp)
ACCGTGGGATCGCTGGTAATCGCTC
LOC_Os07g41890
Target Sequence 
GAGCACTTGGTAACCGAGCACCACTACGGCGAGGGGTCGGGTTCGGGGTCGGGCAACCCCTGCGCCGCGTGCGAGCGCGT
CGTCACCGGCGACGGCTACCGCTGCGAGCACGGCGAGTGCGACTTCCACGTCCACCGGAGCTGCCTCGCCCTCCCGGCGT
CCTTCGCCCTGCACGAGCGCCACGAGCACGAGCTCACGCTCACCCGCCTGACGGGCAGCCGGTGGTGCAACGTCTGCGAC
GTGATCTCCCACGCCGGGTGCCGCATGTACGCCTGCGCGCCGTGCAACTTCAGCGCGCACCCTCGGTGCACGCCTGTGTT
GGACGGCGCACACCAGCAGCCGCAGCCGCCGCAGCAGCAGGAGGGGGAGGAGAAACGGAGCGTGGGGGTACGCGCCGCGA
AGGTTGCTCTCAAGATCGGCGTCGCCGTCGGTTTGACCGCGGTGGATGTCGGAACGACCGGCGGGTTGGCGACCGTGGGA
TCGCTGGTAATCGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis