Browse Element(s) Details


OsAffx.5599.1.S1_at

Description tigr:9635.m04198
TID=OsAffx.5599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4193011/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41880NANA7+25086965..25093120retrotransposon protein, putative, unclassified
LOC_Os07g41890OsAffx.16680.1.S1_at11/117+25096011..25096568C1-like domain containing protein
LOC_Os07g41900Os.4114.1.S2_at11/117+25098705..25102889expressed protein
LOC_Os07g41910OsAffx.16681.1.S1_at11/117+25104300..25104803C1-like domain containing protein
LOC_Os07g41920OsAffx.5598.1.S1_at11/117+25109024..25110796C1-like domain containing protein
LOC_Os07g41930OsAffx.5599.1.S1_at11/117+25116072..25116785C1-like domain containing protein
LOC_Os07g41940NANA7+25118121..25118336hypothetical protein
LOC_Os07g41950NANA7+25119746..25120120hypothetical protein
LOC_Os07g41960NANA7+25124777..25125302hypothetical protein
LOC_Os07g41970Os.7582.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41970OsAffx.24279.1.S1_at2/117+25127203..25128015hypothetical protein
LOC_Os07g41980OsAffx.5605.1.S1_at11/117+25129482..25130304C1-like domain containing protein
LOC_Os07g41990NANA7+25134701..25135843hypothetical protein
LOC_Os07g42000OsAffx.29757.3.S1_x_at11/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.3.S1_at11/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.1.S1_x_at8/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.4.S1_x_at5/117+25137433..25140270hypothetical protein
LOC_Os07g42010Os.10827.1.S1_x_at8/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42010Os.46055.2.S1_x_at5/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5599.1.S1_at--1157--9131Chr07:25116234..25116258 (25 bp)
TGCGCCGATTACTTCGAGGAGACAG
LOC_Os07g41930
OsAffx.5599.1.S1_at--313--311Chr07:25116316..25116340 (25 bp)
ATACCAACAGGTGGTCGTGCGACCT
LOC_Os07g41930
OsAffx.5599.1.S1_at--586--9151Chr07:25116333..25116357 (25 bp)
TGCGACCTCTGCACGGAAAGCTGTC
LOC_Os07g41930
OsAffx.5599.1.S1_at--55--4671Chr07:25116498..25116522 (25 bp)
GCGTGTCATCAAGGCCTGAACATGT
LOC_Os07g41930
OsAffx.5599.1.S1_at--680--8971Chr07:25116514..25116538 (25 bp)
TGAACATGTGGCACTACCGCTGTGG
LOC_Os07g41930
OsAffx.5599.1.S1_at--893--1791Chr07:25116529..25116553 (25 bp)
ACCGCTGTGGATTTTGCCTCTATAA
LOC_Os07g41930
OsAffx.5599.1.S1_at--144--4471Chr07:25116544..25116568 (25 bp)
GCCTCTATAAGCTGCACGTCGTGTG
LOC_Os07g41930
OsAffx.5599.1.S1_at--930--2891Chr07:25116595..25116619 (25 bp)
AAGGTGACACCAGCCGTTCTCACAA
LOC_Os07g41930
OsAffx.5599.1.S1_at--819--6711Chr07:25116610..25116634 (25 bp)
GTTCTCACAACGCTGGTGCTGGTGC
LOC_Os07g41930
OsAffx.5599.1.S1_at--899--2811Chr07:25116678..25116702 (25 bp)
AAGTTCCTCCTCAGGACAAGTCTCA
LOC_Os07g41930
OsAffx.5599.1.S1_at--499--8151Chr07:25116691..25116715 (25 bp)
GGACAAGTCTCAACATCGCGATCAA
LOC_Os07g41930
Target Sequence 
TGCGCCGATTACTTCGAGGAGACAGTCTCCTTCTTCGCCCACCCGTGGCACACCCTCACGCTCAGCACCATCCCCGACGA
CGATACCAACAGGTGGTCGTGCGACCTCTGCACGGAAAGCTGTCCCCGGGGAAGCTTCGTCTACCGCTGCGCACAGTGCG
GCTTCGACGCTCACCCACTGTGCACGCTGCTCCCGCAGACGATCCGTAGCCCGCTTCACCCGCAGCATGATCTCAACATG
GCCCCTTCATGGGGGACATGCTCAGCGTGTCATCAAGGCCTGAACATGTGGCACTACCGCTGTGGATTTTGCCTCTATAA
GCTGCACGTCGTGTGCCCCTCTGGCGCGGCAAACGCTGGCCAAGGTGACACCAGCCGTTCTCACAACGCTGGTGCTGGTG
CTGCTGCTGCTACGCCGGGCTCGAGCCGCGCCACTCGTATCGCCAAGTTCCTCCTCAGGACAAGTCTCAACATCGCGATC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis