Browse Element(s) Details


OsAffx.19177.2.S1_at

Description tigr:9639.m03203
TID=OsAffx.19177.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3562011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35580OsAffx.7304.1.S1_at11/1111+20358548..20361570NB-ARC domain containing protein
LOC_Os11g35590OsAffx.8479.1.S1_at10/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35590OsAffx.24279.1.S1_at2/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35590Os.7582.1.S1_at1/1111+20365529..20373199retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35600NANA11+20375779..20376288hypothetical protein
LOC_Os11g35610NANA11+20383209..20383569hypothetical protein
LOC_Os11g35620OsAffx.19177.2.S1_s_at11/1111+20383829..20386333expressed protein
LOC_Os11g35620OsAffx.19177.2.S1_at11/1111+20383829..20386333expressed protein
LOC_Os11g35620OsAffx.19177.1.S1_at2/1111+20383829..20386333expressed protein
LOC_Os11g35630Os.53737.1.S1_at1/1111+20386808..20390725retrotransposon protein, putative, unclassified
LOC_Os11g35640OsAffx.31312.1.S1_at11/1111+20392603..20394533Leucine Rich Repeat family protein
LOC_Os11g35650Os.46053.2.S1_x_at10/1111+20396822..20400054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35660Os.49950.1.S1_at4/1111+20400945..20404226Leucine Rich Repeat family protein
LOC_Os11g35670OsAffx.7305.1.S1_at11/1111+20407273..20407533hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19177.2.S1_at--101--8111Chr11:20385710..20385734 (25 bp)
GGACCCATCTTTCATCTTGACAGGG
LOC_Os11g35620
OsAffx.19177.2.S1_at--734--7611Chr11:20385795..20385819 (25 bp)
GGGAAAACACAATCCGATAAGGATA
LOC_Os11g35620
OsAffx.19177.2.S1_at--461--7391Chr11:20385843..20385867 (25 bp)
GTGTATGAAACTATGGGGCCAAATA
LOC_Os11g35620
OsAffx.19177.2.S1_at--539--4771Chr11:20385859..20385883 (25 bp)
GGCCAAATAGTATAGTTGGGCAGGT
LOC_Os11g35620
OsAffx.19177.2.S1_at--690--1231Chr11:20385872..20385896 (25 bp)
AGTTGGGCAGGTTAGATCAAAGGCA
LOC_Os11g35620
OsAffx.19177.2.S1_at--1093--4691Chr11:20385956..20386075 (25 bp)
GCGGCGATCGAGTAAAGATGGTTCT
LOC_Os11g35620
OsAffx.19177.2.S1_at--504--6091Chr11:20386061..20386084 (24 bp)
GAGTAAAGATGGTTCTGTACTAGCT
LOC_Os11g35620
OsAffx.19177.2.S1_at--957--9111Chr11:20386146..20386170 (25 bp)
TGCTGAACCTTCATGCGATCATCAC
LOC_Os11g35620
OsAffx.19177.2.S1_at--1061--2631Chr11:20386151..20386175 (25 bp)
AACCTTCATGCGATCATCACTCGAA
LOC_Os11g35620
OsAffx.19177.2.S1_at--445--3651Chr11:20386154..20386178 (25 bp)
CTTCATGCGATCATCACTCGAAATG
LOC_Os11g35620
OsAffx.19177.2.S1_at--478--9392Chr11:20386167..20386191 (25 bp)
TCACTCGAAATGATGGTAGTAGTAG
LOC_Os11g35620
Target Sequence 
GGACCCATCTTTCATCTTGACAGGGCCTATCCGTGCAATCAACTGCTCTCAGCGTATCGAATTCGAAATCGATCTCAAGG
TTAGGGGGAAAACACAATCCGATAAGGATAAGGTGTTGAGTGCCAGATACATTGTGTATGAAACTATGGGGCCAAATAGT
ATAGTTGGGCAGGTTAGATCAAAGGCAAGGCCAGGCAAGCGTTGCTCGGTAGAGGTCACCTTTGCCCATCTCGCGGGGCG
GTGGAGGCGGCGATCGAGTAAAGATGGTTCTGTACTAGCTGTTGCTGATGATGGTGTGATCAAGCTTGCTCGGAGTGTCG
CCGTCGTCGAAAGTACAGGGGTGCTGAACCTTCATGCGATCATCACTCGAAATGATGGTAGTAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19177.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis