Browse Element(s) Details


Os.49950.1.S1_at

Description gb:AK119422.1
DB_XREF= gi:37989045
TID=Os.49950.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full insert sequence.
FL= gb:AK119422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3545011/11Leucine Rich Repeat family protein, expressed
LOC_Os11g356604/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed
LOC_Os11g35420Os.24530.1.S1_at11/1111+20253546..20256172expressed protein
LOC_Os11g35430OsAffx.19177.2.S1_s_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35430OsAffx.19177.1.S1_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35440OsAffx.7302.1.S1_at9/1111+20263736..20265310hypothetical protein
LOC_Os11g35450Os.49950.1.S1_at11/1111+20268771..20271968Leucine Rich Repeat family protein, expressed
LOC_Os11g35460Os.47463.1.S1_x_at6/1111+20284608..20285602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35460Os.14491.2.S1_x_at5/1111+20284608..20285602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35470NANA11+20285787..20288305transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35480NANA11+20291063..20294368transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35490OsAffx.7303.1.S1_at11/1111+20295383..20298148Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.49950.1.S1_at--194--2051Chr11:20271407..20271431 (25 bp)
ACTTGGCACCCTCTATGATCAAAAC
LOC_Os11g35450
Os.49950.1.S1_at--320--4471Chr11:20271467..20271491 (25 bp)
GCCTCCTCTCCAAAAAAGCTGTTAT
LOC_Os11g35450
Os.49950.1.S1_at--470--4632Chr11:20403595..20403619 (25 bp)
GCGATGCATCAGAGCAAGGTCACCT
LOC_Os11g35660
Os.49950.1.S1_at--1048--5672Chr11:20403642..20403666 (25 bp)
GACATAGGGCCATTTTCCATTGGAG
LOC_Os11g35660
Os.49950.1.S1_at--321--10112Chr11:20403680..20403704 (25 bp)
TATGGCAGGTCTCTGGATTGTCTTC
LOC_Os11g35660
Os.49950.1.S1_at--487--32Chr11:20403696..20403720 (25 bp)
ATTGTCTTCTATGCCCTTTTGTTCA
LOC_Os11g35660
Os.49950.1.S1_at--855--3011Chr11:20271625..20271649 (25 bp)
AATCTTGGAGGGTTGCTTACTTCTG
LOC_Os11g35450
Os.49950.1.S1_at--206--1291Chr11:20271722..20271746 (25 bp)
AGATCCGAGATTGCTGATGTCGCAT
LOC_Os11g35450
Os.49950.1.S1_at--454--771Chr11:20271738..20271762 (25 bp)
ATGTCGCATGTCTCATGGTCATCCA
LOC_Os11g35450
Os.49950.1.S1_at--663--572Chr11:20271758..20271782 (25 bp)
ATCCATCGACTCTGACGAATCCTAT
LOC_Os11g35450
Os.49950.1.S1_at--540--7471Chr11:20271943..20271967 (25 bp)
GTGTGTCAGAAATCACCCTTCAGAC
LOC_Os11g35450
Target Sequence
ACTTGGCACCCTCTATGATCAAAACCATCATCTGTATGATGGCAATGATGGTCTTTGTGGGCCTCCTCTCCAAAAAAGCT
GTTATAAAAGCGATGCATCAGAGCAAGGTCACCTGATGAGAAGTAAACAAGGTTTTGACATAGGGCCATTTTCCATTGGA
GTTGTGATGGGATTTATGGCAGGTCTCTGGATTGTCTTCTATGCCCTTTTGTTCAGGAAATCTTGGAGGGTTGCTTACTT
CTGTCTCTTGGACAAGGTGTATGATGAGGTTTGTGTGATTGCGGTTGTTGGTTGGGCAAGATTGACAGGAAGAACAGATC
CGAGATTGCTGATGTCGCATGTCTCATGGTCATCCATCGACTCTGACGAATCCTATGAATAGATGAAGATGAAAAAGCTG
AAGCAGGTGTAAGACTATTAGTTGGGTTGTATATTTTGTCATGTATGGAGCTTATTAGAGCAAGTACCCTAAATGCATAT
GATGCATAGATCTACAATGATGTGTATATATCTGTTTGTACTGGTACAGTTGTGTAGTGTGTCAGAAATCACCCTTCAGA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis