Browse Element(s) Details


Os.56290.1.S1_at

Description gb:AK109777.1
DB_XREF= gi:32994986
TID=Os.56290.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B09, full insert sequence.
FL= gb:AK109777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3540011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed
LOC_Os11g35420Os.24530.1.S1_at11/1111+20253546..20256172expressed protein
LOC_Os11g35430OsAffx.19177.2.S1_s_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35430OsAffx.19177.1.S1_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35440OsAffx.7302.1.S1_at9/1111+20263736..20265310hypothetical protein
LOC_Os11g35450Os.49950.1.S1_at11/1111+20268771..20271968Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0010143biological_processcutin biosynthesis
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56290.1.S1_at--490--8151Chr11:20246162..20246186 (25 bp)
GGAAAGCGCATACGTGCAGTCTCCT
LOC_Os11g35400
Os.56290.1.S1_at--698--3751Chr11:20246185..20246294 (25 bp)
CTCTCGTTACATCAGTTTGGGTCTA
LOC_Os11g35400
Os.56290.1.S1_at--679--5531Chr11:20246297..20246321 (25 bp)
GAAACAGCTTTGAGTCCTTCCTTGT
LOC_Os11g35400
Os.56290.1.S1_at--885--10791Chr11:20246318..20246342 (25 bp)
TTGTTGCTGTGGTTGTCCCTGAGAA
LOC_Os11g35400
Os.56290.1.S1_at--1015--8431Chr11:20246346..20246370 (25 bp)
GGCCATTGAGGATTGGGCTGCACAA
LOC_Os11g35400
Os.56290.1.S1_at--190--3191Chr11:20246585..20246609 (25 bp)
CAATTCACCTAGAGACAACGCCATT
LOC_Os11g35400
Os.56290.1.S1_at--16--5991Chr11:20246596..20246620 (25 bp)
GAGACAACGCCATTCAGCATAGAGA
LOC_Os11g35400
Os.56290.1.S1_at--883--8071Chr11:20246622..20246646 (25 bp)
GGACCTGGTGACTCCAACTTTTAAG
LOC_Os11g35400
Os.56290.1.S1_at--281--10331Chr11:20246641..20246665 (25 bp)
TTTAAGCTCAAGAGACCCCAGCTGC
LOC_Os11g35400
Os.56290.1.S1_at--450--2911Chr11:20246836..20246859 (24 bp)
AAGGATTGCATTGATCAGCTGTACA
LOC_Os11g35400
Os.56290.1.S1_at--37--2371Chr11:20247003..20247027 (25 bp)
AAAGCCTATCTGTTGTGTCTCTAGA
LOC_Os11g35400
Target Sequence 
GGAAAGCGCATACGTGCAGTCTCCTCTCGTTACATCAGTTTGGGTCTATGGAAACAGCTTTGAGTCCTTCCTTGTTGCTG
TGGTTGTCCCTGAGAAGCAGGCCATTGAGGATTGGGCTGCACAAAACAACAAGACTGGTAACTTTGCAGAATTGTGCAAC
GATCCGAAGGCAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGGTTGAGAGGATTTGAGATGCT
AAAGGCAATTCACCTAGAGACAACGCCATTCAGCATAGAGAAGGACCTGGTGACTCCAACTTTTAAGCTCAAGAGACCCC
AGCTGCTCAAATATTACAAGGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGATGGTAAAAC
AGAACCAAGTGGTTATTGAATTTCATGATTATTCAGAAGGAATCATGTACATATCAATAATCATGATTCAAGAGTTAAAG
GCCTATCTTTTTAAGATAAAGAGTTAAAGCCTATCTGTTGTGTCTCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis