Browse Element(s) Details


Os.24530.1.S1_at

Description gb:AK073090.1
DB_XREF= gi:32983113
TID=Os.24530.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022L24, full insert sequence.
FL= gb:AK073090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3542011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed
LOC_Os11g35420Os.24530.1.S1_at11/1111+20253546..20256172expressed protein
LOC_Os11g35430OsAffx.19177.2.S1_s_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35430OsAffx.19177.1.S1_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35440OsAffx.7302.1.S1_at9/1111+20263736..20265310hypothetical protein
LOC_Os11g35450Os.49950.1.S1_at11/1111+20268771..20271968Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24530.1.S1_at--788--5551Chr11:20255667..20255691 (25 bp)
GAAAGCATTTCACATCCAGAGTTAA
LOC_Os11g35420
Os.24530.1.S1_at--1109--6951Chr11:20255695..20255719 (25 bp)
GTAGCTACCTATACATTCTAGATTT
LOC_Os11g35420
Os.24530.1.S1_at--948--6511Chr11:20255740..20255764 (25 bp)
GATATATTCTAACTCCATCAGCACA
LOC_Os11g35420
Os.24530.1.S1_at--356--4331Chr11:20255754..20255778 (25 bp)
CCATCAGCACATTTTTTGGCTCGAA
LOC_Os11g35420
Os.24530.1.S1_at--334--7451Chr11:20255780..20255804 (25 bp)
GTGTAATTTAGCTTCTTTGTCATTC
LOC_Os11g35420
Os.24530.1.S1_at--988--9591Chr11:20255799..20255823 (25 bp)
TCATTCACCATTTGACTCACTTCAT
LOC_Os11g35420
Os.24530.1.S1_at--770--5271Chr11:20255853..20255877 (25 bp)
GAATGACCATTTTCGCATACTTAAT
LOC_Os11g35420
Os.24530.1.S1_at--518--3091Chr11:20255875..20255899 (25 bp)
AATACTAACCTTCAGATGCTACTTG
LOC_Os11g35420
Os.24530.1.S1_at--191--1251Chr11:20255916..20255940 (25 bp)
AGTTGATTCAATATGCCTTCCTGCT
LOC_Os11g35420
Os.24530.1.S1_at--24--4771Chr11:20255938..20255962 (25 bp)
GCTGCTAGGTTCACCGCACATTATA
LOC_Os11g35420
Os.24530.1.S1_at--30--7371Chr11:20256095..20256119 (25 bp)
GTGAAAATCCATACTCTGGCTGATT
LOC_Os11g35420
Target Sequence 
GAAAGCATTTCACATCCAGAGTTAAACTGTAGCTACCTATACATTCTAGATTTCTAGTGAAACTATAGCTACTGATATAT
TCTAACTCCATCAGCACATTTTTTGGCTCGAATGTGTAATTTAGCTTCTTTGTCATTCACCATTTGACTCACTTCATAAG
GAAATAAATCTTAACCTCTGATTAATGAATGACCATTTTCGCATACTTAATACTAACCTTCAGATGCTACTTGTTTTTTC
TTACTATTAAGTTGATTCAATATGCCTTCCTGCTGCTAGGTTCACCGCACATTATATTGTTCAGATTCCATTATTTTAGA
AGTCCTTTTGCAAAAACAAATAAACGAATATAGAAACATTAATGAAATATAGAATTGTTGTTCAAAAATAAGCAAAACTT
TATCTTTTTGAATATTAAGATATTAAATGTGAAAATCCATACTCTGGCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis