Browse Element(s) Details


Os.57062.1.S1_at

Description gb:AK110844.1
DB_XREF= gi:32996053
TID=Os.57062.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B09, full insert sequence.
FL= gb:AK110844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3539011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed
LOC_Os11g35420Os.24530.1.S1_at11/1111+20253546..20256172expressed protein
LOC_Os11g35430OsAffx.19177.2.S1_s_at11/1111+20260615..20262515hypothetical protein
LOC_Os11g35430OsAffx.19177.1.S1_at11/1111+20260615..20262515hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009416biological_processresponse to light stimulus
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010118biological_processstomatal movement
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57062.1.S1_at--971--2951Chr11:20234347..20234371 (25 bp)
AATGGCTTCTTCCATTGATGGCGTC
LOC_Os11g35390
Os.57062.1.S1_at--1002--8871Chr11:20234332..20234356 (25 bp)
TGATGGCGTCTCCAAGGACCAGGAT
LOC_Os11g35390
Os.57062.1.S1_at--815--8091Chr11:20234317..20234341 (25 bp)
GGACCAGGATTATCACATGTGTGCT
LOC_Os11g35390
Os.57062.1.S1_at--105--1291Chr11:20234126..20234150 (25 bp)
AGATCTCTGCTGGATACTGCTGTGC
LOC_Os11g35390
Os.57062.1.S1_at--250--1991Chr11:20234111..20234135 (25 bp)
ACTGCTGTGCAGACCCTATCATGTT
LOC_Os11g35390
Os.57062.1.S1_at--459--711Chr11:20234066..20234090 (25 bp)
ATGATCATCTCAGCCTTAATTTCCC
LOC_Os11g35390
Os.57062.1.S1_at--1039--10491Chr11:20234051..20234075 (25 bp)
TTAATTTCCCATATGAGTCTCTCTT
LOC_Os11g35390
Os.57062.1.S1_at--965--6091Chr11:20234037..20234061 (25 bp)
GAGTCTCTCTTTGCTATAGGTTTCT
LOC_Os11g35390
Os.57062.1.S1_at--949--6751Chr11:20234000..20234024 (25 bp)
GTTAATTTGCACTTGTACTAGCTGT
LOC_Os11g35390
Os.57062.1.S1_at--720--7011Chr11:20233986..20234010 (25 bp)
GTACTAGCTGTTTGATGCTCTCTCT
LOC_Os11g35390
Os.57062.1.S1_at--672--2691Chr11:20233830..20233854 (25 bp)
AAGCTGCCATAATTCGTTGCCTGAT
LOC_Os11g35390
Target Sequence 
AATGGCTTCTTCCATTGATGGCGTCTCCAAGGACCAGGATTATCACATGTGTGCTGTGATCAGTGGTGATGACAAGTCGT
CGTCGTCGGAGATGATGACGGCTGCGGCAATGGCCGGCCANGGCGAGGCGGCCACGACGACCTTCTCGCTGCTCGAGAAC
TGGCTGCTCGACGACATGCCGGGGCAGGCGGCCATGAGCGCCGCCATGGATGGGTTCTTGGAGATCTCTGCTGGATACTG
CTGTGCAGACCCTATCATGTTCTGAACTTTCTGAACTTCTGATGATCATCTCAGCCTTAATTTCCCATATGAGTCTCTCT
TTGCTATAGGTTTCTTAATTTCACTGAGTTAATTTGCACTTGTACTAGCTGTTTGATGCTCTCTCTCTCTCGATGATCTT
GTGNTTCCGGTAATAAACCGTTGGTTTAATTTCCTCAAGAAAAAGCAATCCACCTGGAAATAATCTGGTTGGTTTGGAGA
AATATTGTCAGTTCTCAAGGATGTAATAAANGGATTAAAGCTGCCATAATTCGTTGCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis