Browse Element(s) Details


OsAffx.24114.2.S1_x_at

Description tigr:9630.m00492
TID=OsAffx.24114.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0567011/11expressed protein
LOC_Os11g353201/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05630Os.11634.1.S1_at11/112+2744268..2747426Protein phosphatase 2C containing protein, expressed
LOC_Os02g05640OsAffx.11905.1.S1_at10/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05640Os.49759.1.S1_x_at1/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05650NANA2+2760575..2761260expressed protein
LOC_Os02g05660Os.26998.1.S2_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05660Os.26998.1.S1_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05670Os.12734.1.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_x_at11/112+2772149..2774718expressed protein
LOC_Os02g05680Os.8799.1.S1_at11/112+2776405..2779344pyridine nucleotide-disulphide oxidoreductase family protein, putative, expressed
LOC_Os02g05686Os.25099.1.A1_at10/112+2786757..2789073expressed protein
LOC_Os02g05692Os.17069.1.A1_at11/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05692OsAffx.5663.1.S1_at1/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05700OsAffx.11906.1.S1_at11/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05700Os.47399.1.A1_at3/112+2798816..2803569ZEITLUPE, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24114.2.S1_x_at--91--4112Chr05:2353239..2353494 (25 bp)
CGAACACGCCGGTGGTGATCGCCGT
NONE
OsAffx.24114.2.S1_x_at--748--5371Chr02:2772908..2772932 (25 bp)
GAAGAAGAGCCGAACACGATCAAGT
LOC_Os02g05670
OsAffx.24114.2.S1_x_at--465--1371Chr02:2772903..2772927 (25 bp)
AGAGCCGAACACGATCAAGTCGCCG
LOC_Os02g05670
OsAffx.24114.2.S1_x_at--218--1671Chr02:2772901..2772925 (25 bp)
AGCCGAACACGATCAAGTCGCCGGA
LOC_Os02g05670
OsAffx.24114.2.S1_x_at--385--5491Chr02:2772897..2772921 (25 bp)
GAACACGATCAAGTCGCCGGAGCCG
LOC_Os02g05670
OsAffx.24114.2.S1_x_at--217--5952Chr11:20211738..20211894 (25 bp)
GAGAAGGAGATCGCGACCACCGCCA
LOC_Os11g35320
OsAffx.24114.2.S1_x_at--916--5871Chr02:2772809..2772833 (25 bp)
GAGCCCAAGAAAGGCGACGCCGCTG
LOC_Os02g05670
OsAffx.24114.2.S1_x_at--559--3231Chr02:2772804..2772828 (25 bp)
CAAGAAAGGCGACGCCGCTGCTACT
LOC_Os02g05670
OsAffx.24114.2.S1_x_at--545--4211Chr02:2772754..2772778 (25 bp)
CCGCCTCCTCGACGGAGGAGGACAA
LOC_Os02g05670
OsAffx.24114.2.S1_x_at--802--6451Chr02:2772645..2772669 (25 bp)
GATCAAGAAGCAGCGTGACGACGAC
LOC_Os02g05670
OsAffx.24114.2.S1_x_at--480--10631Chr02:2772431..2772455 (25 bp)
TTCGAGACCGTCATGGACGCCAAGC
LOC_Os02g05670
Target Sequence 
CGAACACGCCGGTGGTGATCGCCGTCGCGGCGGTGGAGGAAGAAGAGCCGAACACGATCAAGTCGCCGGAGCCGGAGAAG
GAGATCGCGACCACCGCCACCACCATCATCGAAGAGGAGGAGGTGGTCGACGACGACGAGCCCAAGAAAGGCGACGCCGC
TGCTACTCCAGTGCCCACCGACTCGCCTGCCGCCGCCTCCTCGACGGAGGAGGACAAGTTCGTCGTGGTGGTGAAGGAGG
AGGACAAGTTCTTCGCGGTGGTGAAGGAGGATGACAAGTTCGTGGCGGTGGTGAAGGAGGCGATCAAGAAGCAGCGTGAC
GACGACGCCGACGGCGACGAGCTGGTGCGGAGGTTCAAGGGGAGCAGGGTGAAGACGGCGATGGAGAAGAGGTCGGAGGA
GGAGCAGCCTCGCCGGCGGGAGATGGCGCGGCGGAGCAACGACGTGATCGAGGAGGCGCGGAGCAAGCTCCTGGAGAAGC
GGCAGTGCAGCAGGGTGAAGGCGCTCGTCGGCGCCTTCGAGACCGTCATGGACGCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24114.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis