Browse Element(s) Details


Os.47399.1.A1_at

Description gb:BX901712
DB_XREF= gi:40491828
DB_XREF=BX901712
CLONE=p720c12p3
TID=Os.47399.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47399 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g057003/11ZEITLUPE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05670Os.12734.1.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_x_at11/112+2772149..2774718expressed protein
LOC_Os02g05680Os.8799.1.S1_at11/112+2776405..2779344pyridine nucleotide-disulphide oxidoreductase family protein, putative, expressed
LOC_Os02g05686Os.25099.1.A1_at10/112+2786757..2789073expressed protein
LOC_Os02g05692Os.17069.1.A1_at11/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05692OsAffx.5663.1.S1_at1/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05700OsAffx.11906.1.S1_at11/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05700Os.47399.1.A1_at3/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05710Os.8141.1.S1_at11/112+2804122..2807633expressed protein
LOC_Os02g05720OsAffx.11907.1.S1_at11/112+2812235..2816191PPR986-12, putative, expressed
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed
LOC_Os02g05744OsAffx.11908.1.S1_at10/112+2824486..2830255Glycosyl hydrolase family 9 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007623biological_processcircadian rhythm
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0042752biological_processregulation of circadian rhythm
GO:0043153biological_processentrainment of circadian clock by photoperiod
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0015030cellular_componentCajal body
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47399.1.A1_at--252--10331NONE
TTTCATTGGACCGAAGCCTGGACAT
NONE
Os.47399.1.A1_at--1094--2651NONE
AAGCCTGGACATTTTCACCGTGGAA
NONE
Os.47399.1.A1_at--1000--4191NONE
CCGTGGAAGCCACACTGTTACACAA
NONE
Os.47399.1.A1_at--660--1091NONE
AGTGAGTTATTCTCCTTGGAAGGTT
NONE
Os.47399.1.A1_at--801--6931NONE
GTAGTAGATCCACTTATCGGGTTAC
NONE
Os.47399.1.A1_at--1129--10111NONE
TATCGGGTTACTCACCGTTTCTCGG
NONE
Os.47399.1.A1_at--1110--3771NONE
CTCGGCGTCGCTATTTGTTTGGCTT
NONE
Os.47399.1.A1_at--372--6731Chr02:2803340..2803364 (25 bp)
GTTCTCATCAGATGTTTCCTACACT
LOC_Os02g05700
Os.47399.1.A1_at--327--10871NONE
TTGGAAGCTCTGATGCTATGCAACA
NONE
Os.47399.1.A1_at--1087--2211Chr02:2803414..2803438 (25 bp)
ACAAGCATGCTCTTCAAAGGCCAAA
LOC_Os02g05700
Os.47399.1.A1_at--190--291Chr02:2803442..2803466 (25 bp)
ATAGTGATGATGCTGTACTGATCCA
LOC_Os02g05700
Target Sequence 
TTTCATTGGACCGAAGCCTGGACATTTTCACCGTGGAAGCCACACTGTTACACAATTGAAATGTGCAAGCAAAGTGAGTT
ATTCTCCTTGGAAGGTTAGTTGGTGTTTGGTTGGAAAGAGATGATGACTAGTCTCAAGTAGTAGATCCACTTATCGGGTT
ACTCACCGTTTCTCGGCGTCGCTATTTGTTTGGCTTACTACAAAATAATAGATAATAATTATCACCCATAACCTAATAAT
TATCTGTTTGTTCTCATCAGATGTTTCCTACACTCAACCAAAAGGATCTGGAATTGTATAGTTGGAAGCTCTGATGCTAT
GCAACAAGCATGCTCTTCAAAGGCCAAAATGATAGTGATGATGCTGTACTGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47399.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis