Browse Element(s) Details


OsAffx.11906.1.S1_at

Description tigr:9630.m00495
TID=OsAffx.11906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kelch motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0570011/11ZEITLUPE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05670Os.12734.1.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_x_at11/112+2772149..2774718expressed protein
LOC_Os02g05680Os.8799.1.S1_at11/112+2776405..2779344pyridine nucleotide-disulphide oxidoreductase family protein, putative, expressed
LOC_Os02g05686Os.25099.1.A1_at10/112+2786757..2789073expressed protein
LOC_Os02g05692Os.17069.1.A1_at11/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05692OsAffx.5663.1.S1_at1/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05700OsAffx.11906.1.S1_at11/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05700Os.47399.1.A1_at3/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05710Os.8141.1.S1_at11/112+2804122..2807633expressed protein
LOC_Os02g05720OsAffx.11907.1.S1_at11/112+2812235..2816191PPR986-12, putative, expressed
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed
LOC_Os02g05744OsAffx.11908.1.S1_at10/112+2824486..2830255Glycosyl hydrolase family 9 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007623biological_processcircadian rhythm
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0042752biological_processregulation of circadian rhythm
GO:0043153biological_processentrainment of circadian clock by photoperiod
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0015030cellular_componentCajal body
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11906.1.S1_at--176--9531Chr02:2802454..2802478 (25 bp)
TCTCAGTGACACGTATCTTTTGGAT
LOC_Os02g05700
OsAffx.11906.1.S1_at--773--4131Chr02:2802549..2802573 (25 bp)
CGCTCTCTGTCTACGATGGCAGGAA
LOC_Os02g05700
OsAffx.11906.1.S1_at--1057--7491Chr02:2802588..2802612 (25 bp)
GTGGTCTTGCTAAAAGCGGTCCTCT
LOC_Os02g05700
OsAffx.11906.1.S1_at--1022--4651Chr02:2802603..2802627 (25 bp)
GCGGTCCTCTACGACTAAGGTCTAA
LOC_Os02g05700
OsAffx.11906.1.S1_at--622--351Chr02:2802657..2802681 (25 bp)
ATAAGCCATGCTGGCGGTGTATCAC
LOC_Os02g05700
OsAffx.11906.1.S1_at--438--3031Chr02:2802691..2802715 (25 bp)
AATGCCAGGAGCCAGTAATCCAGCT
LOC_Os02g05700
OsAffx.11906.1.S1_at--427--7071Chr02:2802705..2802729 (25 bp)
GTAATCCAGCTGGAGTTGGTCCACC
LOC_Os02g05700
OsAffx.11906.1.S1_at--666--771Chr02:2802744..2802768 (25 bp)
ATGTCGCTGTGAGCCTTCCTGGAGG
LOC_Os02g05700
OsAffx.11906.1.S1_at--6--7151Chr02:2802801..2802825 (25 bp)
GTCTTCACTCCGCTTCAAAGCTTTA
LOC_Os02g05700
OsAffx.11906.1.S1_at--308--3911Chr02:2802830..2802854 (25 bp)
CTGGATCCGACTGAAGAGAAGCCTA
LOC_Os02g05700
OsAffx.11906.1.S1_at--1012--2551Chr02:2802976..2803000 (25 bp)
AACTGAACTGCATGAGCTTTCTCTG
LOC_Os02g05700
Target Sequence 
TCTCAGTGACACGTATCTTTTGGATGTAACAATGGAAAGACCTGTTTGGAGGGAGATACCTGCATCTTGGACTCCACCTT
GTAGATTGGGGCACTCGCTCTCTGTCTACGATGGCAGGAAAATCCTGATGTTTGGTGGTCTTGCTAAAAGCGGTCCTCTA
CGACTAAGGTCTAATGATGTGTTCACATTGGATTTAAGTGAAAATAAGCCATGCTGGCGGTGTATCACCGGCAGTGGAAT
GCCAGGAGCCAGTAATCCAGCTGGAGTTGGTCCACCCCCTCGCCTTGACCATGTCGCTGTGAGCCTTCCTGGAGGGAGAA
TTTTGATATTTGGTGGATCAGTGGCAGGTCTTCACTCCGCTTCAAAGCTTTACCTGCTGGATCCGACTGAAGAGAAGCCT
ACCTGGAGGATACTGAATGTTCCTGGCCGCCCTCCGCGATTTGCCTGGGGCCACAGTACCTGTGTTGTGGGAGGTACAAA
GGCGATAGTTCTTGGAGGACAAACTGGAGAGGAGTGGACACTAACTGAACTGCATGAGCTTTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis