Browse Element(s) Details


OsAffx.5663.1.S1_at

Description tigr:9635.m04827
TID=OsAffx.5663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tRNA synthetases class I (W and Y), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4786011/11tRNA synthetases class I family protein, expressed
LOC_Os02g056921/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g169701/11calmodulin-binding protein, putative, expressed
LOC_Os11g460801/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed
LOC_Os07g47840Os.51758.2.S1_at11/117+28564422..28565349expressed protein
LOC_Os07g47850OsAffx.16755.1.S1_at11/117+28573227..28575404hypothetical protein
LOC_Os07g47860OsAffx.5663.1.S1_at11/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860Os.14679.1.S1_at10/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860Os.46805.1.S1_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860OsAffx.9818.1.S1_x_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860OsAffx.27834.1.S1_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47870OsAffx.12184.1.S1_x_at1/117+28594450..28597657hypothetical protein
LOC_Os07g47880NANA7+28597998..28598513retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.1.S1_x_at8/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.3.S1_x_at7/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.3.S1_s_at6/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.2.S1_at4/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.4.S1_x_at1/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47900Os.45721.1.S1_x_at1/117+28605909..28608425retrotransposon protein, putative, unclassified
LOC_Os07g47910OsAffx.6261.1.S1_x_at1/117+28611795..28614796retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005515molecular_functionprotein binding
GO:0005516molecular_functioncalmodulin binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5663.1.S1_at--962--7171Chr07:28584617..28584641 (25 bp)
GTCTGTTGATCTCTTAGCTAGCCTA
LOC_Os07g47860
OsAffx.5663.1.S1_at--508--1571Chr07:28584602..28584626 (25 bp)
AGCTAGCCTATGAATTAGTTCTGAA
LOC_Os07g47860
OsAffx.5663.1.S1_at--96--231Chr07:28584575..28584599 (25 bp)
ATATTTTTTAGCATACTTCTGGGAT
LOC_Os07g47860
OsAffx.5663.1.S1_at--157--7911Chr07:28584527..28584551 (25 bp)
TGGGTTGGGTTCTCTAAGACACATT
LOC_Os07g47860
OsAffx.5663.1.S1_at--53--8591Chr07:28584459..28584483 (25 bp)
TGGTTAGTACTTCCTTTGCTTTATG
LOC_Os07g47860
OsAffx.5663.1.S1_at--585--4891Chr07:28584442..28584466 (25 bp)
GCTTTATGTTTTGGCGTGTTGGATT
LOC_Os07g47860
OsAffx.5663.1.S1_at--583--1536Chr09:15998552..15998573 (22 bp)
AGCATGGATCCATGTATGTGCTTCA
NONE
OsAffx.5663.1.S1_at--710--5511Chr07:28584316..28584340 (25 bp)
GAACAATGAGAGTACTTCCTCCTTT
LOC_Os07g47860
OsAffx.5663.1.S1_at--592--6091Chr07:28584307..28584331 (25 bp)
GAGTACTTCCTCCTTTCCATGATAT
LOC_Os07g47860
OsAffx.5663.1.S1_at--758--10051Chr07:28584197..28584221 (25 bp)
TAGTTTAGTTAAATCCTCCATTGGA
LOC_Os07g47860
OsAffx.5663.1.S1_at--817--8878Chr11:27390560..27390579 (20 bp)
TGAGTCCTATTTCTTTTTGCACCAA
LOC_Os11g46080
Target Sequence 
GTCTGTTGATCTCTTAGCTAGCCTATGAATTAGTTCTGAAATATATTTTTTAGCATACTTCTGGGATAATTTAGGGGCTT
ATATATGAGTTGGGTTGGGTTCTCTAAGACACATTGATAGGTTGGAGTGTTATTAGTGGAGACATAATATAGGTTCGTTG
GTTAGTACTTCCTTTGCTTTATGTTTTGGCGTGTTGGATTTGAAGCATGGATCCATGTATGTGCTTCATATATTTCCAAA
TTCATATGGATGATAGTGAATTTAGACGAGGGCTGGAGAGGCCAAAACGTCCTATAATTTGGAACAATGAGAGTACTTCC
TCCTTTCCATGATATAAGACATTTTGGGTTTGTCCTAAGTCAAACTTACTAATGTTTGATAAATTTATAGAAAAACTTAG
CAACATCTACAATATCAAATTAGTTTAGTTAAATCCTCCATTGGATATATTTTTATAGTATATTTGTTTTGTATTGAAAA
TGCTACTCCCTCCTTCCAAAAATGTGAGTCCTATTTCTTTTTGCACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis