Browse Element(s) Details


Os.14679.1.S1_at

Description gb:AK065735.1
DB_XREF= gi:32975753
TID=Os.14679.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038G02, full insert sequence.
FL= gb:AK065735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4786010/11tRNA synthetases class I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed
LOC_Os07g47840Os.51758.2.S1_at11/117+28564422..28565349expressed protein
LOC_Os07g47850OsAffx.16755.1.S1_at11/117+28573227..28575404hypothetical protein
LOC_Os07g47860OsAffx.5663.1.S1_at11/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860Os.14679.1.S1_at10/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860Os.46805.1.S1_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860OsAffx.9818.1.S1_x_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860OsAffx.27834.1.S1_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47870OsAffx.12184.1.S1_x_at1/117+28594450..28597657hypothetical protein
LOC_Os07g47880NANA7+28597998..28598513retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.1.S1_x_at8/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.3.S1_x_at7/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.3.S1_s_at6/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.2.S1_at4/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.4.S1_x_at1/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47900Os.45721.1.S1_x_at1/117+28605909..28608425retrotransposon protein, putative, unclassified
LOC_Os07g47910OsAffx.6261.1.S1_x_at1/117+28611795..28614796retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14679.1.S1_at--568--4071NONE
CGAGATATTGCAGCCTGTTCGTGAT
NONE
Os.14679.1.S1_at--4--3671Chr07:28583373..28583397 (25 bp)
CTTATCTTTGGCCATGTAATGAACA
LOC_Os07g47860
Os.14679.1.S1_at--234--2271Chr07:28583349..28583373 (25 bp)
AAATCAATCCCTATCTATGAGCAGT
LOC_Os07g47860
Os.14679.1.S1_at--258--3051Chr07:28583344..28583368 (25 bp)
AATCCCTATCTATGAGCAGTCTTAG
LOC_Os07g47860
Os.14679.1.S1_at--318--7871Chr07:28583318..28583342 (25 bp)
GGTTCCTTTTGTGCCACAAGGTCAT
LOC_Os07g47860
Os.14679.1.S1_at--519--10811Chr07:28583310..28583334 (25 bp)
TTGTGCCACAAGGTCATCAGTTCAG
LOC_Os07g47860
Os.14679.1.S1_at--140--10371Chr07:28583243..28583267 (25 bp)
TTTTTCCTCATCACAACCTTGTTTC
LOC_Os07g47860
Os.14679.1.S1_at--744--4291Chr07:28583238..28583262 (25 bp)
CCTCATCACAACCTTGTTTCTTGTA
LOC_Os07g47860
Os.14679.1.S1_at--1111--10791Chr07:28583218..28583242 (25 bp)
TTGTATTTTTTACCTGCTATATGAA
LOC_Os07g47860
Os.14679.1.S1_at--621--3091Chr07:28583195..28583219 (25 bp)
AATATGAAACCTCCCGCTGTCTCGT
LOC_Os07g47860
Os.14679.1.S1_at--345--9311Chr07:28583184..28583208 (25 bp)
TCCCGCTGTCTCGTGCGGTTAGTTC
LOC_Os07g47860
Target Sequence 
CGAGATATTGCAGCCTGTTCGTGATCACTTTGGAAGGAATGGTGAAGCAAAGGATCTAGTGGAAGCTATCGGGGAATGCT
ACGGTGCTGACTGATATTACATGTTCACTCTTGGACTTAGGAGTAGTGTTCTTATCTTTGGCCATGTAATGAACAAATCA
ATCCCTATCTATGAGCAGTCTTAGAGGTTCCTTTTGTGCCACAAGGTCATCAGTTCAGTGCTTGCTCTTTCCTCGTGGGT
GTGTTAGAAGGGTGTCTTTTTTTTTCCTCATCACAACCTTGTTTCTTGTATTTTTTACCTGCTATATGAATATGAAACCT
CCCGCTGTCTCGTGCGGTTAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis