Browse Element(s) Details


OsAffx.6261.1.S1_x_at

Description tigr:9637.m01074
TID=OsAffx.6261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1342011/11hypothetical protein
LOC_Os03g318001/11hypothetical protein
LOC_Os07g479101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13400OsAffx.29831.1.S1_at10/119+7740162..7743069expressed protein
LOC_Os09g13400OsAffx.29831.1.S1_s_at3/119+7740162..7743069expressed protein
LOC_Os09g13410Os.51183.1.S1_at11/119+7752372..7754377expressed protein
LOC_Os09g13420OsAffx.6261.1.S1_x_at11/119+7758918..7761038hypothetical protein
LOC_Os09g13430NANA9+7769806..7772168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13440OsAffx.29832.2.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13440OsAffx.29832.2.S1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.2.A1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.1.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13450OsAffx.17685.1.S1_at11/119+7778360..7778914hypothetical protein
LOC_Os09g13460OsAffx.17686.1.S1_at10/119+7780270..7781314hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6261.1.S1_x_at--1087--7494Chr06:16333543..16333649 (24 bp)
GTGGTCGGCCTGATGGCGATGGGAC
NONE
OsAffx.6261.1.S1_x_at--850--3931Chr09:7759244..7759446 (25 bp)
CGGGAAGGTGATCGAGAAACGCCTA
LOC_Os09g13420
OsAffx.6261.1.S1_x_at--1121--1711Chr09:7759128..7759152 (25 bp)
ACCAGTAGATCGTAGAGATCTTTTA
LOC_Os09g13420
OsAffx.6261.1.S1_x_at--955--6391Chr09:7759121..7759145 (25 bp)
GATCGTAGAGATCTTTTACTATCTA
LOC_Os09g13420
OsAffx.6261.1.S1_x_at--1081--4011Chr09:7759118..7759142 (25 bp)
CGTAGAGATCTTTTACTATCTAAAA
LOC_Os09g13420
OsAffx.6261.1.S1_x_at--621--3371Chr09:7759027..7759051 (25 bp)
CACCACCTAAATTTTCATCTTCAAG
LOC_Os09g13420
OsAffx.6261.1.S1_x_at--472--3131Chr09:7759018..7759042 (25 bp)
AATTTTCATCTTCAAGTGATCGAGA
LOC_Os09g13420
OsAffx.6261.1.S1_x_at--629--171Chr09:7759017..7759041 (25 bp)
ATTTTCATCTTCAAGTGATCGAGAT
LOC_Os09g13420
OsAffx.6261.1.S1_x_at--594--8591Chr09:7758981..7759005 (25 bp)
TGGTCCTCAACCAGTCGGTTACAAC
LOC_Os09g13420
OsAffx.6261.1.S1_x_at--964--2454Chr07:16585125..16585145 (21 bp)
AACAATCTCTCGACATCTAACGTGA
NONE
OsAffx.6261.1.S1_x_at--103--9371Chr09:7758950..7758974 (25 bp)
TCGACATCTAACGTGACAATCAACA
LOC_Os09g13420
Target Sequence 
GTGGTCGGCCTGATGGCGATGGGACGGCGTGGCGCGCGGAGAGCGAGGCGACGGTGACGCGCGGCGACGCGACAACGCGG
GGCTTGGAGCGGCGACGCGACGGGCGGGAAGGTGATCGAGAAACGCCTACACTTGGTCCTCGACCAGTAGATCGTAGCGA
TCTCTCACCACCTAAAAATTCGTCTTTAGGTGATCGAGATACACCTACACCTGGTCCTCGACCAGTAGATCGTAGAGATC
TTTTACTATCTAAAAATTCATCTTCAGGTGATCGAGATACGTCTACACCTGATCCTCGACCAGTAGATCGTAGCGATCTC
TCACCACCTAAATTTTCATCTTCAAGTGATCGAGATATGCCTACACCTGGTCCTCAACCAGTCGGTTACAACAATCTCTC
GACATCTAACGTGACAATCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6261.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis