Browse Element(s) Details


OsAffx.29831.1.S1_s_at

Description tigr:9637.m01072
TID=OsAffx.29831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g134003/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13380OsAffx.17683.1.S1_at11/119+7716496..7719777hypothetical protein
LOC_Os09g13390OsAffx.29830.1.S1_at11/119+7726035..7726335hypothetical protein
LOC_Os09g13400OsAffx.29831.1.S1_at10/119+7740162..7743069expressed protein
LOC_Os09g13400OsAffx.29831.1.S1_s_at3/119+7740162..7743069expressed protein
LOC_Os09g13410Os.51183.1.S1_at11/119+7752372..7754377expressed protein
LOC_Os09g13420OsAffx.6261.1.S1_x_at11/119+7758918..7761038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29831.1.S1_s_at--453--5291Chr09:7740254..7740278 (25 bp)
GAATGGCTGGCAAACATCGGTATCT
LOC_Os09g13400
OsAffx.29831.1.S1_s_at--327--4111Chr09:7740228..7740252 (25 bp)
CGCTTACGTATAATAGTTGGGTCAA
LOC_Os09g13400
OsAffx.29831.1.S1_s_at--473--7071Chr09:7740208..7740232 (25 bp)
GTCAAGGATCAACCGATCGAGACCT
LOC_Os09g13400
OsAffx.29831.1.S1_s_at--773--31Chr09:7740135..7740159 (25 bp)
ATTGTAATAATTTGTCGTCGAGCTG
NONE
OsAffx.29831.1.S1_s_at--1012--10791Chr09:7740124..7740148 (25 bp)
TTGTCGTCGAGCTGTATAGTATGTA
NONE
OsAffx.29831.1.S1_s_at--377--1071Chr09:7740057..7740081 (25 bp)
AGGGATATATATAGGGCTTCTTGCC
NONE
OsAffx.29831.1.S1_s_at--622--8291Chr09:7740043..7740067 (25 bp)
GGCTTCTTGCCCTAGTTAATTAATT
NONE
OsAffx.29831.1.S1_s_at--413--3571Chr09:7740010..7740034 (25 bp)
CATAAGCTTGCGGACGTGTGTGTTA
NONE
OsAffx.29831.1.S1_s_at--964--7471Chr09:7739995..7740019 (25 bp)
GTGTGTGTTAGCGTTTGCAATAATT
NONE
OsAffx.29831.1.S1_s_at--891--291Chr09:7739952..7739976 (25 bp)
ATACGGATGTACTATGTCTGACAAT
NONE
OsAffx.29831.1.S1_s_at--391--1111Chr09:7739920..7739944 (25 bp)
AGTGTATCCAGATTCGTGTGCGTAT
NONE
Target Sequence 
GAATGGCTGGCAAACATCGGTATCTACGCTTACGTATAATAGTTGGGTCAAGGATCAACCGATCGAGACCTAACAACAAA
TGAATATGTACTGTTGCTTAATTGCAGTTATAATTAAGTATTGTAATAATTTGTCGTCGAGCTGTATAGTATGTAAGAAC
AAATTAGATAATGTATTGAATTCTCCAAGAGAAATATAGGGATATATATAGGGCTTCTTGCCCTAGTTAATTAATTAATA
ACGTCATAAGCTTGCGGACGTGTGTGTTAGCGTTTGCAATAATTTGCTTGTACGTTAAATACATACGGATGTACTATGTC
TGACAATATTAATTAGTGTATCCAGATTCGTGTGCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29831.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis