Browse Element(s) Details


OsAffx.29830.1.S1_at

Description tigr:9637.m01071
TID=OsAffx.29830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1339011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13350NANA9+7705313..7708603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13360NANA9+7710293..7712467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13370Os.14491.2.S1_x_at3/119+7712929..7715136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13370Os.47463.1.S1_x_at3/119+7712929..7715136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13380OsAffx.17683.1.S1_at11/119+7716496..7719777hypothetical protein
LOC_Os09g13390OsAffx.29830.1.S1_at11/119+7726035..7726335hypothetical protein
LOC_Os09g13400OsAffx.29831.1.S1_at10/119+7740162..7743069expressed protein
LOC_Os09g13400OsAffx.29831.1.S1_s_at3/119+7740162..7743069expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29830.1.S1_at--170--7271Chr09:7726269..7726293 (25 bp)
GTCCACTTCACAGAGTCGAACCATG
LOC_Os09g13390
OsAffx.29830.1.S1_at--536--9691Chr09:7726204..7726286 (25 bp)
TCACAGAGTCGAACCATGATCCACG
LOC_Os09g13390
OsAffx.29830.1.S1_at--1093--1331Chr09:7726200..7726282 (25 bp)
AGAGTCGAACCATGATCCACGCCGG
LOC_Os09g13390
OsAffx.29830.1.S1_at--204--5431Chr09:7726194..7726276 (25 bp)
GAACCATGATCCACGCCGGAGTAAA
LOC_Os09g13390
OsAffx.29830.1.S1_at--286--6352Chr09:7726187..7726211 (25 bp)
GATCCACGCCGGAGTAAAGGTGAAG
LOC_Os09g13390
OsAffx.29830.1.S1_at--207--7391Chr09:7726159..7726183 (25 bp)
GTGTCCTTAGCCGAGGTTCACCGGC
LOC_Os09g13390
OsAffx.29830.1.S1_at--457--9971Chr09:7726152..7726176 (25 bp)
TAGCCGAGGTTCACCGGCGAAAAAT
LOC_Os09g13390
OsAffx.29830.1.S1_at--393--8191Chr09:7726122..7726146 (25 bp)
GGAAGAAATCAAGCTGCCCGACCTA
LOC_Os09g13390
OsAffx.29830.1.S1_at--821--1411Chr09:7726119..7726143 (25 bp)
AGAAATCAAGCTGCCCGACCTAGAT
LOC_Os09g13390
OsAffx.29830.1.S1_at--747--2691Chr09:7726112..7726136 (25 bp)
AAGCTGCCCGACCTAGATCCAGAAG
LOC_Os09g13390
OsAffx.29830.1.S1_at--983--4771Chr09:7726110..7726134 (25 bp)
GCTGCCCGACCTAGATCCAGAAGGG
LOC_Os09g13390
Target Sequence 
GTCCACTTCACAGAGTCGAACCATGATCCACGCCGGAGTAAAGGTGAAGGGGGTGTCCTTAGCCGAGGTTCACCGGCGAA
AAATGGGAAGGAAGAAATCAAGCTGCCCGACCTAGATCCAGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis