Browse Element(s) Details


OsAffx.17686.1.S1_at

Description tigr:9637.m01079
TID=OsAffx.17686.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1346010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13420OsAffx.6261.1.S1_x_at11/119+7758918..7761038hypothetical protein
LOC_Os09g13430NANA9+7769806..7772168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13440OsAffx.29832.2.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13440OsAffx.29832.2.S1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.2.A1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.1.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13450OsAffx.17685.1.S1_at11/119+7778360..7778914hypothetical protein
LOC_Os09g13460OsAffx.17686.1.S1_at10/119+7780270..7781314hypothetical protein
LOC_Os09g13470Os.53954.1.S1_at11/119+7796868..7799107expressed protein
LOC_Os09g13480Os.14491.2.S1_x_at4/119+7803064..7806239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g13480Os.47463.1.S1_x_at1/119+7803064..7806239transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17686.1.S1_at--637--9511Chr09:7781260..7781284 (25 bp)
TCTAGGGCGATCGTCGAAGGCCAAG
LOC_Os09g13460
OsAffx.17686.1.S1_at--1128--7191Chr09:7781248..7781272 (25 bp)
GTCGAAGGCCAAGCTTTTGTGTCTG
LOC_Os09g13460
OsAffx.17686.1.S1_at--29--1571Chr09:7781237..7781261 (25 bp)
AGCTTTTGTGTCTGGTGATGCTCTC
LOC_Os09g13460
OsAffx.17686.1.S1_at--1111--8851NONE
TGATGCTCTCGTTCCGCATCCAGTT
NONE
OsAffx.17686.1.S1_at--876--3531Chr09:7780494..7780514 (21 bp)
CATCCAGTTCGCTCGCTGCGGGAGG
LOC_Os09g13460
OsAffx.17686.1.S1_at--929--6311Chr09:7780450..7780474 (25 bp)
GATGAACATGGACTTGACCACTCGC
LOC_Os09g13460
OsAffx.17686.1.S1_at--594--8531Chr09:7780442..7780466 (25 bp)
TGGACTTGACCACTCGCGAATATGA
LOC_Os09g13460
OsAffx.17686.1.S1_at--677--1991Chr09:7780431..7780455 (25 bp)
ACTCGCGAATATGACTTGCTGCTTT
LOC_Os09g13460
OsAffx.17686.1.S1_at--240--5691Chr09:7780419..7780443 (25 bp)
GACTTGCTGCTTTCATGGCAGATTG
LOC_Os09g13460
OsAffx.17686.1.S1_at--138--7611Chr09:7780352..7780376 (25 bp)
GGGCAAACCCCACCAAAGTGGTCAT
LOC_Os09g13460
OsAffx.17686.1.S1_at--386--2871Chr09:7780337..7780361 (25 bp)
AAGTGGTCATCATGGACGATGGCGT
LOC_Os09g13460
Target Sequence 
TCTAGGGCGATCGTCGAAGGCCAAGCTTTTGTGTCTGGTGATGCTCTCGTTCCGCATCCAGTTCGCTCGCTGCGGGAGGC
GGAGACCGAGGCAAAAAAGATGAACATGGACTTGACCACTCGCGAATATGACTTGCTGCTTTCATGGCAGATTGAGGGGC
GGGCGAACCGGGTGCATGACGGCGAACTGCCTCCCTGGGCAAACCCCACCAAAGTGGTCATCATGGACGATGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis