Browse Element(s) Details


Os.45721.1.S1_x_at

Description gb:NM_183746.1
DB_XREF= gi:34894619
GEN=P0028G04.6
TID=Os.45721.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0028G04.6 (P0028G04.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0028G04.6 (P0028G04.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g172403/11retrotransposon protein, putative, unclassified
LOC_Os02g254002/11retrotransposon protein, putative, unclassified
LOC_Os05g519602/11hypothetical protein
LOC_Os03g331652/11retrotransposon protein, putative, unclassified
LOC_Os03g331772/11retrotransposon protein, putative, unclassified
LOC_Os09g131302/11retrotransposon protein, putative, unclassified
LOC_Os06g176102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g479001/11retrotransposon protein, putative, unclassified
LOC_Os08g248501/11hypothetical protein
LOC_Os05g175901/11retrotransposon protein, putative, unclassified
LOC_Os10g128041/11retrotransposon protein, putative, unclassified
LOC_Os03g302101/11hypothetical protein
LOC_Os04g063801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17200Os.38395.3.S1_x_at9/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.2.S1_x_at7/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.4.S1_x_at7/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.5.S1_at2/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.1.S1_at1/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17210OsAffx.29887.1.S1_at11/119+10565285..10566313hypothetical protein
LOC_Os09g17220OsAffx.6313.1.S1_at11/119+10569471..10569870hypothetical protein
LOC_Os09g17230OsAffx.29888.1.S1_at11/119+10571524..10571998hypothetical protein
LOC_Os09g17240Os.45721.1.S1_x_at3/119+10574908..10576723retrotransposon protein, putative, unclassified
LOC_Os09g17250Os.53142.1.S1_at3/119+10577655..10580546retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17260NANA9+10582307..10582840hypothetical protein
LOC_Os09g17270OsAffx.29889.1.S1_at10/119+10583691..10587885hypothetical protein
LOC_Os09g17270Os.426.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17270OsAffx.16944.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17270OsAffx.25360.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17280NANA9+10589466..10592798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.47463.1.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.14491.2.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17300OsAffx.29890.1.S1_at11/119+10600276..10600518hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45721.1.S1_x_at--1132--19118Chr08:10987770..10987794 (25 bp)
ACGGAGAACACATCCTTTTCTTCAC
NONE
Os.45721.1.S1_x_at--1105--105114Chr08:10987790..10987814 (25 bp)
TTCACCGGCGCCAATCTAGGATCGC
NONE
Os.45721.1.S1_x_at--669--6011NONE
GAGAGAGAGAGCGACCTGACTTCGA
NONE
Os.45721.1.S1_x_at--838--6011NONE
GAGAGAGAGCGACCTGACTTCGATT
NONE
Os.45721.1.S1_x_at--495--1351NONE
AGAGAGCGACCTGACTTCGATTGGG
NONE
Os.45721.1.S1_x_at--255--313Chr09:7569254..7569276 (23 bp)
ATTGGGTTGCGGCACTTGAAGATGG
LOC_Os09g13130
Os.45721.1.S1_x_at--603--75959Chr12:10547578..10547602 (25 bp)
GGGCTTCAGTTCCAGAACTTCGCAT
NONE
Os.45721.1.S1_x_at--1111--9315Chr09:10576591..10576615 (25 bp)
TCGCATAGTTCATATCTTTGGCGTC
LOC_Os09g17240
Os.45721.1.S1_x_at--255--41330Chr12:10547598..10547672 (25 bp)
CGCATAGTTCATATCTTTGGCGTCA
NONE
Os.45721.1.S1_x_at--524--100524Chr12:17097418..17097442 (25 bp)
TAGTTCATATCTTTGGCGTCAACCT
NONE
Os.45721.1.S1_x_at--1017--83513Chr09:7569314..7569337 (24 bp)
GGCGTCAACCTCATAGAAGTTACCA
LOC_Os09g13130
Target Sequence 
ACGGAGAACACATCCTTTTCTTCACCGGCGCCAATCTAGGATCGCCTCNGCCGTCATCGTCGATTACCGCTGCCTCGCNN
NTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCG
CCAAGACCTCGACAACCCTAGCTCGACCCACGNNNANNNNNNNNNCGGNGNNGNNNNGGNCGACGAGGACGGCGGCGTTC
CGGCGGTCGGCGGGCGAAATGGAAGGGTGGACGAGGTCGGCGAGGACGCGGCGAAGCCGAAGGAGGCGGCGCCGAGGCGG
GAGGCGGTCCGGGGTGACGACGGCGGCGGACCGGAGCTCGGCGGCGACGGCGGAGAGAGAGAGCGACCTGACTTCGATTG
GGTTGCGGCACTTGAAGATGGGGCTTCAGTTCCAGAACTTCGCATAGTTCATATCTTTGGCGTCAACCTCATAGAAGTTA
CCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45721.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis