Browse Element(s) Details


OsAffx.29888.1.S1_at

Description tigr:9637.m01466
TID=OsAffx.29888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1723011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17200Os.38395.3.S1_x_at9/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.2.S1_x_at7/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.4.S1_x_at7/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.5.S1_at2/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.1.S1_at1/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17210OsAffx.29887.1.S1_at11/119+10565285..10566313hypothetical protein
LOC_Os09g17220OsAffx.6313.1.S1_at11/119+10569471..10569870hypothetical protein
LOC_Os09g17230OsAffx.29888.1.S1_at11/119+10571524..10571998hypothetical protein
LOC_Os09g17240Os.45721.1.S1_x_at3/119+10574908..10576723retrotransposon protein, putative, unclassified
LOC_Os09g17250Os.53142.1.S1_at3/119+10577655..10580546retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17260NANA9+10582307..10582840hypothetical protein
LOC_Os09g17270OsAffx.29889.1.S1_at10/119+10583691..10587885hypothetical protein
LOC_Os09g17270Os.426.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17270OsAffx.16944.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17270OsAffx.25360.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17280NANA9+10589466..10592798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.47463.1.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.14491.2.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29888.1.S1_at--1158--9791Chr09:10571938..10571962 (25 bp)
TTCGTTCCCGTGGATTTCGCCACGT
LOC_Os09g17230
OsAffx.29888.1.S1_at--516--7931Chr09:10571927..10571951 (25 bp)
GGATTTCGCCACGTGGCCGGAGATC
LOC_Os09g17230
OsAffx.29888.1.S1_at--1066--7271Chr09:10571882..10571906 (25 bp)
GTGCCAAGTTATCGCACCGTCCGAT
LOC_Os09g17230
OsAffx.29888.1.S1_at--892--1211Chr09:10571876..10571900 (25 bp)
AGTTATCGCACCGTCCGATGGCCTT
LOC_Os09g17230
OsAffx.29888.1.S1_at--796--4451Chr09:10571850..10571874 (25 bp)
GCCTCTTCACCGAGCTGAACAAATT
LOC_Os09g17230
OsAffx.29888.1.S1_at--880--4031Chr09:10571840..10571864 (25 bp)
CGAGCTGAACAAATTTGGCGAAAGT
LOC_Os09g17230
OsAffx.29888.1.S1_at--239--211Chr09:10571828..10571852 (25 bp)
ATTTGGCGAAAGTTGCACGGCCGTG
LOC_Os09g17230
OsAffx.29888.1.S1_at--889--8871Chr09:10571693..10571717 (25 bp)
TGAGTGCGGAAAAGTCTGCCTTGGA
LOC_Os09g17230
OsAffx.29888.1.S1_at--1144--5711Chr09:10571584..10571608 (25 bp)
GACCATAAAAAAGGCGAATGCGGAA
LOC_Os09g17230
OsAffx.29888.1.S1_at--701--5251Chr09:10571569..10571593 (25 bp)
GAATGCGGAAAACAAGGCTCTTACA
LOC_Os09g17230
OsAffx.29888.1.S1_at--724--8311Chr09:10571554..10571578 (25 bp)
GGCTCTTACAGGAGACAACAAGTCT
LOC_Os09g17230
Target Sequence 
TTCGTTCCCGTGGATTTCGCCACGTGGCCGGAGATCACTCCTTTCATGGACGGGGTGTGCCAAGTTATCGCACCGTCCGA
TGGCCTTGGCCTCTTCACCGAGCTGAACAAATTTGGCGAAAGTTGCACGGCCGTGGAGAGCTTGTTTGTGCGGGGCCTCG
CCGCGCACTTGAGTGCGGAAAAGTCTGCCTTGGAGAGGCCGGACGGGTACCGTCTTCGCCTCCGAAAAACCGAGGAGGAT
CTTTGCCACAAGGAAGACGAAAGACGTGTTGTGGCGGAGACCATAAAAAAGGCGAATGCGGAAAACAAGGCTCTTACAGG
AGACAACAAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis