Browse Element(s) Details


OsAffx.25360.1.S1_at

Description tigr:9631.m03346
TID=OsAffx.25360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3407011/11hypothetical protein
LOC_Os09g172701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g34000NANA3+19350660..19351292retrotransposon protein, putative, unclassified, expressed
LOC_Os03g34020OsAffx.13181.1.S1_x_at10/113+19362883..19363563hypothetical protein
LOC_Os03g34030OsAffx.25359.1.S1_at11/113+19364092..19365773hypothetical protein
LOC_Os03g34030OsAffx.11259.1.S1_at2/113+19364092..19365773hypothetical protein
LOC_Os03g34040Os.14870.1.S1_at11/113+19367543..19371729ribosomal protein S5 containing protein, expressed
LOC_Os03g34054NANA3+19374910..19375434NA
LOC_Os03g34070OsAffx.25360.1.S1_at11/113+19376063..19378530hypothetical protein
LOC_Os03g34090NANA3+19381262..19381969hypothetical protein
LOC_Os03g34096NANA3+19384837..19386144hypothetical protein
LOC_Os03g34102OsAffx.16354.1.S1_x_at1/113+19386887..19388800hypothetical protein
LOC_Os03g34110Os.10731.1.A1_a_at7/113+19391971..19392798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34110Os.38764.1.S1_x_at1/113+19391971..19392798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34120NANA3+19395096..19395724hypothetical protein
LOC_Os03g34129NANA3+19396168..19398189retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34140NANA3+19400701..19402966retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25360.1.S1_at--736--9171Chr03:19376868..19376892 (25 bp)
TGCCGAAACTCGTCATGCTAGAAGG
LOC_Os03g34070
OsAffx.25360.1.S1_at--708--2891Chr03:19377095..19377119 (25 bp)
AAGGTGTACGATGGCGAACTTCCTC
LOC_Os03g34070
OsAffx.25360.1.S1_at--575--9691Chr03:19377186..19377210 (25 bp)
TCAAACTTGCCCCTCGGAAGTGAAG
LOC_Os03g34070
OsAffx.25360.1.S1_at--496--4411Chr03:19377221..19377245 (25 bp)
GCCACCAACTATGACGCTGATGACG
LOC_Os03g34070
OsAffx.25360.1.S1_at--286--5791Chr03:19377242..19377266 (25 bp)
GACGAAGACACTATGCATGACAATG
LOC_Os03g34070
OsAffx.25360.1.S1_at--253--37910Chr10:1971242..1971261 (20 bp)
CTCCATTAGGGTTTAGGCTTTACAG
NONE
OsAffx.25360.1.S1_at--548--1072Chr03:19378308..19378332 (25 bp)
AGGGACGTTTGCTTGGGTATACAGT
LOC_Os03g34070
OsAffx.25360.1.S1_at--216--4591Chr03:19378369..19378393 (25 bp)
GCGAATAGGCCTAAGCAACTGGGAT
LOC_Os03g34070
OsAffx.25360.1.S1_at--474--8431Chr03:19378403..19378427 (25 bp)
GGCCTCTTCAAAGTCGGGCTTGTTA
LOC_Os03g34070
OsAffx.25360.1.S1_at--467--1752Chr03:19378449..19378473 (25 bp)
ACCTACACACTTTGCCCAAGATGCA
LOC_Os03g34070
OsAffx.25360.1.S1_at--323--10791Chr03:19378475..19378499 (25 bp)
TTGATCTTGCCAGATACCAGCGCGA
LOC_Os03g34070
Target Sequence 
TGCCGAAACTCGTCATGCTAGAAGGGGCGAACGCCAGCTGCTTACGTGGCGGCCGGCCGGCCGGGCAAACAAGGTGTACG
ATGGCGAACTTCCTCCCCCGGGCGAAGCCCTTCAAGGCTGATGGTGATGAAGGGACTTCAGGAAATGGAAACTCGGGCAA
GTCAAACTTGCCCCTCGGAAGTGAAGGGCCCCTGCCGCCACCAACTATGACGCTGATGACGAAGACACTATGCATGACAA
TGACGGCGAAGAGGAAGGAGGTTCCTCCATTAGGGTTTAGGCTTTACAGGGAAATTTACATGGCTGCCCTTATGAAAGGG
ACGTTTGCTTGGGTATACAGTGTAATTTGGATACATGGGCCTCTAATGGGCCAATTGGCGAATAGGCCTAAGCAACTGGG
ATGGCCTCTTGGGCCTCTTCAAAGTCGGGCTTGTTATGGCGAAGCCCCCATCCTTCAACCTACACACTTTGCCCAAGATG
CATTTGATCTTGCCAGATACCAGCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis