Browse Element(s) Details


Os.14870.1.S1_at

Description gb:AK065820.1
DB_XREF= gi:32975838
TID=Os.14870.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.14870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042D13, full insert sequence.
FL= gb:AK060924.1 gb:AK119178.1 gb:AK065820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3404011/11ribosomal protein S5 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33980OsAffx.26189.1.A1_s_at3/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.29747.1.S1_at2/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.51594.1.S1_at1/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.54151.1.S1_x_at1/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33990NANA3+19348383..19348814retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34000NANA3+19350660..19351292retrotransposon protein, putative, unclassified, expressed
LOC_Os03g34020OsAffx.13181.1.S1_x_at10/113+19362883..19363563hypothetical protein
LOC_Os03g34030OsAffx.25359.1.S1_at11/113+19364092..19365773hypothetical protein
LOC_Os03g34030OsAffx.11259.1.S1_at2/113+19364092..19365773hypothetical protein
LOC_Os03g34040Os.14870.1.S1_at11/113+19367543..19371729ribosomal protein S5 containing protein, expressed
LOC_Os03g34054NANA3+19374910..19375434NA
LOC_Os03g34070OsAffx.25360.1.S1_at11/113+19376063..19378530hypothetical protein
LOC_Os03g34090NANA3+19381262..19381969hypothetical protein
LOC_Os03g34096NANA3+19384837..19386144hypothetical protein
LOC_Os03g34102OsAffx.16354.1.S1_x_at1/113+19386887..19388800hypothetical protein
LOC_Os03g34110Os.10731.1.A1_a_at7/113+19391971..19392798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34110Os.38764.1.S1_x_at1/113+19391971..19392798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g34120NANA3+19395096..19395724hypothetical protein
LOC_Os03g34129NANA3+19396168..19398189retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14870.1.S1_at--624--671Chr03:19370976..19371000 (25 bp)
ATGAACGGCCGTCGCAATCTCGTCA
LOC_Os03g34040
Os.14870.1.S1_at--855--2831Chr03:19370939..19370961 (23 bp)
AAGTATTCGACCTTCCCGCATAGAG
LOC_Os03g34040
Os.14870.1.S1_at--26--3411Chr03:19368128..19368152 (25 bp)
CAGACTATGGAGCAGCCAGGGTCAT
LOC_Os03g34040
Os.14870.1.S1_at--88--1071Chr03:19368111..19368135 (25 bp)
AGGGTCATGTTGAGGCCTGCTTGCC
LOC_Os03g34040
Os.14870.1.S1_at--25--2751Chr03:19367977..19368001 (25 bp)
AAGAGCTACCATCAAGGCGACCCAA
LOC_Os03g34040
Os.14870.1.S1_at--712--3411Chr03:19367924..19367948 (25 bp)
CAGAGCGCGGGCTTCCAATGGAGCA
LOC_Os03g34040
Os.14870.1.S1_at--233--9751Chr03:19367801..19367825 (25 bp)
TAATCCTACATTTAAGTCCTCTCCC
LOC_Os03g34040
Os.14870.1.S1_at--1014--9491Chr03:19367782..19367806 (25 bp)
TCTCCCCACCCTAAATGCATTATGT
LOC_Os03g34040
Os.14870.1.S1_at--523--791Chr03:19367761..19367785 (25 bp)
ATGTGTCTCCACATATACATGGCAA
LOC_Os03g34040
Os.14870.1.S1_at--43--6331Chr03:19367729..19367753 (25 bp)
GATGAATTGATCTGCGAATACCTTT
LOC_Os03g34040
Os.14870.1.S1_at--1078--4571Chr03:19367716..19367740 (25 bp)
GCGAATACCTTTAGCTTCACTAGTA
LOC_Os03g34040
Target Sequence 
ATGAACGGCCGTCGCAATCTCGTCACCGTGCCGCTCACCAAGTATTCGACCTTCCCGCATAGAGCAGATGCAGACTATGG
AGCAGCCAGGGTCATGTTGAGGCCTGCTTGCCCTGGATCTGGTGTAATTGCAGGTGGAGCTGTGAGGGTCGTGCTGGAGA
TGGCTGGGGTTGAAAATGCTCTGGGGAAACAGCTGAGGAGCAAGAACCCCCTCAACAATGCAAGAGCTACCATCAAGGCG
ACCCAAATGATGAGGCAGTTCAAGGATGTTGCTGCAGAGCGCGGGCTTCCAATGGAGCAGCTATGGAAATAATCAAATAA
ATCAACCTTAAATTCCNTCCAATATTTTTCTTTCTCCATTTCTTGAGTTCATTTTCAGTTGTATCTGTCAGTGGGGATAA
TCCTACATTTAAGTCCTCTCCCCACCCTAAATGCATTATGTGTCTCCACATATACATGGCAAAGCTTTAGATGAATTGAT
CTGCGAATACCTTTAGCTTCACTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis