Browse Element(s) Details


Os.51594.1.S1_at

Description gb:AK063133.1
DB_XREF= gi:32973151
TID=Os.51594.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-F11, full insert sequence.
FL= gb:AK063133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g339801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33930NANA3+19320577..19321497hypothetical protein
LOC_Os03g33940NANA3+19323079..19326885retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33950NANA3+19327918..19330480retrotransposon, putative, centromere-specific
LOC_Os03g33960NANA3+19331458..19332153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33970Os.24942.4.A1_x_at5/113+19336771..19337568hypothetical protein
LOC_Os03g33980OsAffx.26189.1.A1_s_at3/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.29747.1.S1_at2/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.51594.1.S1_at1/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33980Os.54151.1.S1_x_at1/113+19344452..19347027retrotransposon protein, putative, unclassified
LOC_Os03g33990NANA3+19348383..19348814retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34000NANA3+19350660..19351292retrotransposon protein, putative, unclassified, expressed
LOC_Os03g34020OsAffx.13181.1.S1_x_at10/113+19362883..19363563hypothetical protein
LOC_Os03g34030OsAffx.25359.1.S1_at11/113+19364092..19365773hypothetical protein
LOC_Os03g34030OsAffx.11259.1.S1_at2/113+19364092..19365773hypothetical protein
LOC_Os03g34040Os.14870.1.S1_at11/113+19367543..19371729ribosomal protein S5 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51594.1.S1_at--432--10191Chr09:18165234..18165258 (25 bp)
TATATAAAGGATCCCCTAGCTGCCC
NONE
Os.51594.1.S1_at--923--9831Chr09:18165238..18165262 (25 bp)
TAAAGGATCCCCTAGCTGCCCTCTT
NONE
Os.51594.1.S1_at--640--9971Chr09:18165250..18165274 (25 bp)
TAGCTGCCCTCTTCCGTTTGCGTCG
NONE
Os.51594.1.S1_at--1019--9551Chr09:18165259..18165283 (25 bp)
TCTTCCGTTTGCGTCGAGTCCAAGC
NONE
Os.51594.1.S1_at--541--10651Chr09:18165261..18165285 (25 bp)
TTCCGTTTGCGTCGAGTCCAAGCCG
NONE
Os.51594.1.S1_at--17--4231Chr09:18165263..18165287 (25 bp)
CCGTTTGCGTCGAGTCCAAGCCGCA
NONE
Os.51594.1.S1_at--448--8611Chr09:18165631..18165655 (25 bp)
TGGTCCAGTGCCATCGCTGCGATGA
NONE
Os.51594.1.S1_at--961--3451Chr09:18165636..18165660 (25 bp)
CAGTGCCATCGCTGCGATGATGTCA
NONE
Os.51594.1.S1_at--178--7131Chr09:18165657..18165681 (25 bp)
GTCATCGCGACATCATAAATCTTTT
NONE
Os.51594.1.S1_at--807--3531Chr09:18165659..18165683 (25 bp)
CATCGCGACATCATAAATCTTTTTT
NONE
Os.51594.1.S1_at--422--10036Chr09:18165698..18165722 (25 bp)
TAGATAAAATCTGATTAAACTTCGG
NONE
Target Sequence 
TATATAAAGGATCCCCTAGCTGCCCTCTTCCGTTTGCGTCGAGTCCAAGCCGCAGCCGTCGCCCGTAGCGCCGCCACCGC
GTAGCCCTAGTCGTCGCCGTCGTTGTCGTCGCTTCAGCCGCGCCGCGCCGCTGCTGTGGTCGTCGCCGCCGCCTTACGTC
GCCACCGTCGGGTTCGTGAGGAGGAGGAGCACCCCGTCCGCCCCTTTGCAGCCGCCGAAGACCGCCGGAGCGCCGCCGTC
GACGTTGAGCCGAACCGTGCCGCCTTGGGACCTCGTCGCCGGCCGTCGTTTGTCGTCGTCCGTCGTTTTTCTTTGCACCG
GTGAGCTCGCGTCGTCGTCCTCTTTGTGTTGGTGTCTTCAGATAGCCCAACCGAGCTCTCTATCGCCGGCGGAGTTGTGG
TCCAGTGCCATCGCTGCGATGATGTCATCGCGACATCATAAATCTTTTTTTAGTTTTTCTGTATTAGATAAAATCTGATT
AAACTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis