Browse Element(s) Details


Os.51758.2.S1_at

Description gb:AK063620.1
DB_XREF= gi:32973638
TID=Os.51758.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E05, full insert sequence.
FL= gb:AK063620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4784011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47790Os.8920.1.S1_at11/117+28539007..28540103AP2 domain containing protein, expressed
LOC_Os07g47800OsAffx.424.1.S1_at10/117+28541770..28544079hAT family dimerisation domain containing protein
LOC_Os07g47810OsAffx.16754.1.S1_at11/117+28548084..28549626hypothetical protein
LOC_Os07g47820Os.27104.1.S2_at11/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47820Os.27104.1.S1_at10/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed
LOC_Os07g47840Os.51758.2.S1_at11/117+28564422..28565349expressed protein
LOC_Os07g47850OsAffx.16755.1.S1_at11/117+28573227..28575404hypothetical protein
LOC_Os07g47860OsAffx.5663.1.S1_at11/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860Os.14679.1.S1_at10/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860Os.46805.1.S1_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860OsAffx.9818.1.S1_x_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860OsAffx.27834.1.S1_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51758.2.S1_at--415--711Chr07:28564764..28564788 (25 bp)
ATGTCTGACAAGCTTGGGTCCCAAG
LOC_Os07g47840
Os.51758.2.S1_at--432--8011Chr07:28564806..28564830 (25 bp)
GGAGGCTCGTCGTTCACGCAGAAGC
LOC_Os07g47840
Os.51758.2.S1_at--292--971Chr07:28564918..28564942 (25 bp)
AGGAGGACAGGGAGTACTACCAGAC
LOC_Os07g47840
Os.51758.2.S1_at--499--1871Chr07:28564983..28565007 (25 bp)
ACGAGGAAGCCGATCACGCGTGCCA
LOC_Os07g47840
Os.51758.2.S1_at--471--4751Chr07:28565091..28565115 (25 bp)
GCTGAGGCCATGTTCCGCGAGGTAA
LOC_Os07g47840
Os.51758.2.S1_at--956--8771Chr07:28565101..28565125 (25 bp)
TGTTCCGCGAGGTAACCCCGAGTGG
LOC_Os07g47840
Os.51758.2.S1_at--688--10051Chr07:28565216..28565240 (25 bp)
TAGTCAGGCGTCAGCTGATCCGCGG
LOC_Os07g47840
Os.51758.2.S1_at--755--8851Chr07:28565231..28565255 (25 bp)
TGATCCGCGGGAATGTAGACGTGCA
LOC_Os07g47840
Os.51758.2.S1_at--775--2411Chr07:28565281..28565305 (25 bp)
AAAAATGTTACTCCTGCTGCGTCTA
LOC_Os07g47840
Os.51758.2.S1_at--247--4651Chr07:28565299..28565323 (25 bp)
GCGTCTACTGATCCTATGCCAAGAA
LOC_Os07g47840
Os.51758.2.S1_at--122--2731Chr07:28565319..28565343 (25 bp)
AAGAACTAAAGGGTGCACTCGATCT
LOC_Os07g47840
Target Sequence 
ATGTCTGACAAGCTTGGGTCCCAAGAGCTCGCCGACCCGGCGGGAGGCTCGTCGTTCACGCAGAAGCGGCGGCGGTCGTC
GTCGTCCCGGCCAGCTGACTCGCGCGAGGAGGCGACGCCAGGGGGCGAGGAGGCGGCGGGGCGGAAAGTGAGGGAGGAGG
ACAGGGAGTACTACCAGACGCACAAGCCGTCGCCTCTCGCGGAGCTGGAGTTCGCGGACACGAGGAAGCCGATCACGCGT
GCCACGGACGGCGGCAGTGCCGCGGACAGGTTGTCGGACGTACCCGGGAAGGTGGCGGAGGACACGGCGGACGATTCGCT
GGCGCGCGCTGAGGCCATGTTCCGCGAGGTAACCCCGAGTGGCCGCACTCGCGCGCGCTCGCGGAGATGCTGGCGCGGCG
CCGCGGCGAAGGAGACGCTGCGGGGAGCAGGAGCAGTGCGCCTTGGGGAAGCTAGTCAGGCGTCAGCTGATCCGCGGGAA
TGTAGACGTGCAGTAGTAGCATGGGGGGTATGCAAGAAAAAATGTTACTCCTGCTGCGTCTACTGATCCTATGCCAAGAA
CTAAAGGGTGCACTCGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51758.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis