Browse Element(s) Details


OsAffx.16754.1.S1_at

Description tigr:9635.m04822
TID=OsAffx.16754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4781011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47750Os.50018.1.S1_at11/117+28530232..28531008expressed protein
LOC_Os07g47760Os.55286.1.S1_at11/117+28532570..28533634expressed protein
LOC_Os07g47770OsAffx.28947.1.S1_at11/117+28534147..28534877expressed protein
LOC_Os07g47780Os.39173.1.S1_at11/117+28535893..2853841160S ribosomal protein L18, putative, expressed
LOC_Os07g47790Os.8920.1.S1_at11/117+28539007..28540103AP2 domain containing protein, expressed
LOC_Os07g47800OsAffx.424.1.S1_at10/117+28541770..28544079hAT family dimerisation domain containing protein
LOC_Os07g47810OsAffx.16754.1.S1_at11/117+28548084..28549626hypothetical protein
LOC_Os07g47820Os.27104.1.S2_at11/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47820Os.27104.1.S1_at10/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed
LOC_Os07g47840Os.51758.2.S1_at11/117+28564422..28565349expressed protein
LOC_Os07g47850OsAffx.16755.1.S1_at11/117+28573227..28575404hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16754.1.S1_at--196--5231Chr07:28549284..28549308 (25 bp)
GAATTTGTTCTATGTCGTGCTGAGC
LOC_Os07g47810
OsAffx.16754.1.S1_at--187--7311Chr07:28549268..28549292 (25 bp)
GTGCTGAGCAATGACACTGCATTCA
LOC_Os07g47810
OsAffx.16754.1.S1_at--323--4851Chr07:28548472..28548491 (20 bp)
GCTACAGCAATCGTGGTTGGCTAAA
LOC_Os07g47810
OsAffx.16754.1.S1_at--631--9931Chr07:28548419..28548443 (25 bp)
TACGGAGCTAGTCTCCGTCAGGCAG
LOC_Os07g47810
OsAffx.16754.1.S1_at--1032--9931Chr07:28548379..28548403 (25 bp)
TACCCGCCCTGGGAAAGCGACTAAG
LOC_Os07g47810
OsAffx.16754.1.S1_at--100--1631Chr07:28548364..28548388 (25 bp)
AGCGACTAAGCGTTCAAGAGCCCCA
LOC_Os07g47810
OsAffx.16754.1.S1_at--1005--6751Chr07:28548353..28548377 (25 bp)
GTTCAAGAGCCCCAAGTCAATCGAG
LOC_Os07g47810
OsAffx.16754.1.S1_at--28--3791Chr07:28548327..28548351 (25 bp)
CTCGAGAGGCCGTTATAACTCTGGA
LOC_Os07g47810
OsAffx.16754.1.S1_at--269--4491Chr07:28548214..28548238 (25 bp)
GCCGGAGCCCCATGGAGTCTCTGGA
LOC_Os07g47810
OsAffx.16754.1.S1_at--874--4371Chr07:28548169..28548193 (25 bp)
CCAACAAGCCTCCAATGACATCGGG
LOC_Os07g47810
OsAffx.16754.1.S1_at--14--8331Chr07:28548121..28548145 (25 bp)
GGCTGCTAACGGATCTCCGGAGTTG
LOC_Os07g47810
Target Sequence 
GAATTTGTTCTATGTCGTGCTGAGCAATGACACTGCATTCAGTTGGAGAAAAACATCGAATACATGCTACAGCAATCGTG
GTTGGCTAAACAATATTGTTGAGGAGTGGCTCCGGAATTACGGAGCTAGTCTCCGTCAGGCAGCCTCCGTCCCGGAGCTA
CCCGCCCTGGGAAAGCGACTAAGCGTTCAAGAGCCCCAAGTCAATCGAGCCTCGAGAGGCCGTTATAACTCTGGAGGGTA
TCAGGCCGTCGGAGGCCCGCGGAGCCTCCGGAGATCACCCGACTGCCGAAGCCCCGTGGAGCCCCCCTGGAGGCCACCTG
ATCGCCGGAGCCCCATGGAGTCTCTGGAGGCCACCGAATCGCCGGAACCCAACAAGCCTCCAATGACATCGGGCCTCTGG
GGGCCAATCGACCTCCGGCTGCTAACGGATCTCCGGAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis