Browse Element(s) Details


Os.50018.1.S1_at

Description gb:AK119672.1
DB_XREF= gi:37989295
TID=Os.50018.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G07, full insert sequence.
FL= gb:AK119672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47730OsAffx.21897.5.S1_x_at4/117+28510359..28513299retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47740NANA7+28513619..28519714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47750Os.50018.1.S1_at11/117+28530232..28531008expressed protein
LOC_Os07g47760Os.55286.1.S1_at11/117+28532570..28533634expressed protein
LOC_Os07g47770OsAffx.28947.1.S1_at11/117+28534147..28534877expressed protein
LOC_Os07g47780Os.39173.1.S1_at11/117+28535893..2853841160S ribosomal protein L18, putative, expressed
LOC_Os07g47790Os.8920.1.S1_at11/117+28539007..28540103AP2 domain containing protein, expressed
LOC_Os07g47800OsAffx.424.1.S1_at10/117+28541770..28544079hAT family dimerisation domain containing protein
LOC_Os07g47810OsAffx.16754.1.S1_at11/117+28548084..28549626hypothetical protein
LOC_Os07g47820Os.27104.1.S2_at11/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47820Os.27104.1.S1_at10/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.50018.1.S1_at--382--10651Chr07:28530383..28530498 (25 bp)
TTCCCAAACGCGGACGTGGAGCTGA
LOC_Os07g47750
Os.50018.1.S1_at--327--5491Chr07:28530533..28530557 (25 bp)
GAACAGCAACGGGTCGTTCGCGATG
LOC_Os07g47750
Os.50018.1.S1_at--987--5631Chr07:28530615..28530639 (25 bp)
GACACGCCGCTGATCAAGTGCGACG
LOC_Os07g47750
Os.50018.1.S1_at--101--1831Chr07:28530742..28530766 (25 bp)
ACGCCCACTAATATACAACATCTCA
LOC_Os07g47750
Os.50018.1.S1_at--26--3071Chr07:28530774..28530798 (25 bp)
AATCTCGATTTGGTCCTATCTTGTC
LOC_Os07g47750
Os.50018.1.S1_at--728--7991Chr07:28530809..28530833 (25 bp)
GGATGTACCGTAATTTCTACTAGTA
LOC_Os07g47750
Os.50018.1.S1_at--46--1191Chr07:28530851..28530875 (25 bp)
AGTACTGATCTCATCTGTATCGCCT
LOC_Os07g47750
Os.50018.1.S1_at--599--8751Chr07:28530866..28530890 (25 bp)
TGTATCGCCTGTACGCTGAAGCTCA
LOC_Os07g47750
Os.50018.1.S1_at--1035--4751Chr07:28530880..28530904 (25 bp)
GCTGAAGCTCATTGGCCTGCTTAGA
LOC_Os07g47750
Os.50018.1.S1_at--812--8031Chr07:28530908..28530932 (25 bp)
GGAGTTGCGAATGTTTTCTTGGTCA
LOC_Os07g47750
Os.50018.1.S1_at--2--9911Chr07:28530958..28530982 (25 bp)
TACTGTTACCTTGTTCTGAACCTAA
LOC_Os07g47750
Target Sequence
TTCCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGCGGGGGCGACGACGAACAGCAACGGGTCGTTCGC
GATGGAGGCGGACCTGACGAGCGGGCTGGCGATGCTCATCGGCGGGTGCAAGCTGGTGGTGGACACGCCGCTGATCAAGT
GCGACGCCAACCTGCCGGCGGCGGGGAGCCTCGTCTCCTACCTGCAGGGCCCGCTCACCAGGCTGCTCGGCGGCATCTTC
CGCCTCTTCCCCGCCGGCTTCTCCTTCCACGCCCACTAATATACAACATCTCATTATGCAAATCTCGATTTGGTCCTATC
TTGTCTATGGAAACTGGATGTACCGTAATTTCTACTAGTAGAATACTAGTAGTACGTAGTACTGATCTCATCTGTATCGC
CTGTACGCTGAAGCTCATTGGCCTGCTTAGAGCAGGAGTTGCGAATGTTTTCTTGGTCAGATGAATGCTGTATGGGTCTA
AAATTACTGTTACCTTGTTCTGAACCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis