Browse Element(s) Details


OsAffx.28947.1.S1_at

Description tigr:9635.m04815
TID=OsAffx.28947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4777011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47730OsAffx.21897.5.S1_x_at4/117+28510359..28513299retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47740NANA7+28513619..28519714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47750Os.50018.1.S1_at11/117+28530232..28531008expressed protein
LOC_Os07g47760Os.55286.1.S1_at11/117+28532570..28533634expressed protein
LOC_Os07g47770OsAffx.28947.1.S1_at11/117+28534147..28534877expressed protein
LOC_Os07g47780Os.39173.1.S1_at11/117+28535893..2853841160S ribosomal protein L18, putative, expressed
LOC_Os07g47790Os.8920.1.S1_at11/117+28539007..28540103AP2 domain containing protein, expressed
LOC_Os07g47800OsAffx.424.1.S1_at10/117+28541770..28544079hAT family dimerisation domain containing protein
LOC_Os07g47810OsAffx.16754.1.S1_at11/117+28548084..28549626hypothetical protein
LOC_Os07g47820Os.27104.1.S2_at11/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47820Os.27104.1.S1_at10/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28947.1.S1_at--692--4651Chr07:28534232..28534256 (25 bp)
GCGTCGTCTACTGTTCACTGCAATG
LOC_Os07g47770
OsAffx.28947.1.S1_at--373--9971Chr07:28534376..28534400 (25 bp)
TACCGTGCGTCTGCAGATCAGTAGC
LOC_Os07g47770
OsAffx.28947.1.S1_at--343--1191Chr07:28534395..28534419 (25 bp)
AGTAGCTACGAAATCCCGACTGCTG
LOC_Os07g47770
OsAffx.28947.1.S1_at--9--7911Chr07:28534613..28534637 (25 bp)
GGTTGTCCCTCACGGCGCAAGAATA
LOC_Os07g47770
OsAffx.28947.1.S1_at--772--5851Chr07:28534680..28534704 (25 bp)
GACCAGCTGCAATCTTCGAGTGATC
LOC_Os07g47770
OsAffx.28947.1.S1_at--999--6091Chr07:28534697..28534721 (25 bp)
GAGTGATCTGCTTCCAGGACTTGCG
LOC_Os07g47770
OsAffx.28947.1.S1_at--297--1251Chr07:28534730..28534754 (25 bp)
AGATTACCTACTCAGTAACGCCACA
LOC_Os07g47770
OsAffx.28947.1.S1_at--399--9811Chr07:28534745..28534769 (25 bp)
TAACGCCACAATGGAGGTTCTCCGT
LOC_Os07g47770
OsAffx.28947.1.S1_at--280--1011Chr07:28534759..28534783 (25 bp)
AGGTTCTCCGTGAGCTAGCCGACGA
LOC_Os07g47770
OsAffx.28947.1.S1_at--858--9971Chr07:28534774..28534798 (25 bp)
TAGCCGACGACATAGTCCCAACTGG
LOC_Os07g47770
OsAffx.28947.1.S1_at--659--2552Chr07:28534793..28534817 (25 bp)
AACTGGAGTATCCTACGGCGGCGAC
LOC_Os07g47770
Target Sequence 
GCGTCGTCTACTGTTCACTGCAATGCCTCACATTGCCCAATCTTCTGCCGAAGGCTACCGTGCGTCTGCAGATCAGTAGC
TACGAAATCCCGACTGCTGGCAACCAAGGCTTCATCAGGAGGAACAGCAAGGGCCAATTCGTGGTGTTGCTGAACGTGAC
ATCGAGCGAGATGATGGGTTCTCTGATGAGCGGCAGCGGTAGAGTGGCGGTGATCACTCCTCCTCCGGCGGCGAGCGGCG
GCGCGTCTCTCCCCGCCGCCGCCGCCGCCGGCGGGACGACCTTGGTGGCGCCGGTTGTCCCTCACGGCGCAAGAATACTC
GGTGCCACCGCTGCAGACAATACACTGCGTCAAATTCTCGACCAGCTGCAATCTTCGAGTGATCTGCTTCCAGGACTTGC
GCAAGGACTAGATTACCTACTCAGTAACGCCACAATGGAGGTTCTCCGTGAGCTAGCCGACGACATAGTCCCAACTGGAG
TATCCTACGGCGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis