Browse Element(s) Details


Os.11456.1.S1_at

Description gb:AK101251.1
DB_XREF= gi:32986460
TID=Os.11456.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032F02, full insert sequence.
FL= gb:AK101251.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g478306/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47760Os.55286.1.S1_at11/117+28532570..28533634expressed protein
LOC_Os07g47770OsAffx.28947.1.S1_at11/117+28534147..28534877expressed protein
LOC_Os07g47780Os.39173.1.S1_at11/117+28535893..2853841160S ribosomal protein L18, putative, expressed
LOC_Os07g47790Os.8920.1.S1_at11/117+28539007..28540103AP2 domain containing protein, expressed
LOC_Os07g47800OsAffx.424.1.S1_at10/117+28541770..28544079hAT family dimerisation domain containing protein
LOC_Os07g47810OsAffx.16754.1.S1_at11/117+28548084..28549626hypothetical protein
LOC_Os07g47820Os.27104.1.S2_at11/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47820Os.27104.1.S1_at10/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed
LOC_Os07g47840Os.51758.2.S1_at11/117+28564422..28565349expressed protein
LOC_Os07g47850OsAffx.16755.1.S1_at11/117+28573227..28575404hypothetical protein
LOC_Os07g47860OsAffx.5663.1.S1_at11/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860Os.14679.1.S1_at10/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860Os.46805.1.S1_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860OsAffx.9818.1.S1_x_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed
LOC_Os07g47860OsAffx.27834.1.S1_at1/117+28583069..28591654tRNA synthetases class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11456.1.S1_at--1023--3971Chr07:28557858..28557882 (25 bp)
CGGTGTTCCTGCAGTCCAAGATCGA
LOC_Os07g47830
Os.11456.1.S1_at--334--2811Chr07:28557841..28557865 (25 bp)
AAGATCGACAGCCTGATACACCCCA
LOC_Os07g47830
Os.11456.1.S1_at--541--9711Chr07:28557660..28557684 (25 bp)
TCAACTTCGTGCAGGGTGACCTCTG
LOC_Os07g47830
Os.11456.1.S1_at--224--8571Chr07:28557552..28557576 (25 bp)
TGGGTCTTATACTGGTTTTGGTCCT
LOC_Os07g47830
Os.11456.1.S1_at--834--6931Chr07:28557486..28557510 (25 bp)
GTAGTAAACCTGGAGCTACCACCAG
LOC_Os07g47830
Os.11456.1.S1_at--891--871Chr07:28557463..28557487 (25 bp)
AGGCCATCACCACCAAGTGTTTTGT
LOC_Os07g47830
Os.11456.1.S1_at--316--7951Chr07:28557392..28557416 (25 bp)
GGATAGGTTCATTGCTTCTGAGCTC
NONE
Os.11456.1.S1_at--592--71Chr07:28557382..28557406 (25 bp)
ATTGCTTCTGAGCTCTTATTCGTCT
NONE
Os.11456.1.S1_at--849--10411Chr07:28557367..28557391 (25 bp)
TTATTCGTCTCTGCTGTACAACAAG
NONE
Os.11456.1.S1_at--827--6991Chr07:28557342..28557366 (25 bp)
GTACGGTTGTTTGTTGGTGTCGAAT
NONE
Os.11456.1.S1_at--423--6291NONE
GATGACCGTCGCACATAGCTAACAA
NONE
Target Sequence 
CGGTGTTCCTGCAGTCCAAGATCGACAGCCTGATACACCCCAGGGGGTGNNTCGAGTGGAACGGCANNTTCGCGCTCGAC
ACGCTCTACTACGCCGAGTACATGAACCGCGGCGACGGCGCCGACACGTCGGCGAGGGTGTCGTGNCCGGGGTACCACGT
GCTCACCAACGCCACCGACGCGGCCAACTTCACCGTGCTCAACTTCGTGCAGGGTGACCTCTGGCTCAACTCCAGCTCGT
TCCCCTACATCTTGGGGTTGAGCTGAAAGTGGTGGCTTCTGGACAGTCTCTGGNGATGGGGATTTTTGGGTCTTATACTG
GTTTTGGTCCTTTTTGGAATAAGAGTAGCTCATCACAGGTTTAAGATAATTTGTAGTAAACCTGGAGCTACCACCAGGCC
ATCACCACCAAGTGTTTTGTTACGAGGGTTGAAGCCTACNATGGCCGAAGGCTAATCATTGGAAGGGGATAGGTTCATTG
CTTCTGAGCTCTTATTCGTCTCTGCTGTACAACAAGGTACGGTTGTTTGTTGGTGTCGAATTATGGACAGATGACCGTCG
CACATAGCTAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis