Browse Element(s) Details


Os.17069.1.A1_at

Description gb:AK120070.1
DB_XREF= gi:37989693
TID=Os.17069.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013003N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003N07, full insert sequence.
FL= gb:AK120070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0569211/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05660Os.26998.1.S2_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05660Os.26998.1.S1_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05670Os.12734.1.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_x_at11/112+2772149..2774718expressed protein
LOC_Os02g05680Os.8799.1.S1_at11/112+2776405..2779344pyridine nucleotide-disulphide oxidoreductase family protein, putative, expressed
LOC_Os02g05686Os.25099.1.A1_at10/112+2786757..2789073expressed protein
LOC_Os02g05692Os.17069.1.A1_at11/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05692OsAffx.5663.1.S1_at1/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05700OsAffx.11906.1.S1_at11/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05700Os.47399.1.A1_at3/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05710Os.8141.1.S1_at11/112+2804122..2807633expressed protein
LOC_Os02g05720OsAffx.11907.1.S1_at11/112+2812235..2816191PPR986-12, putative, expressed
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17069.1.A1_at--39--10311Chr02:2794128..2794152 (25 bp)
TTTCACCTCCCATGATCAGCATAGT
LOC_Os02g05692
Os.17069.1.A1_at--482--8771Chr02:2794384..2794408 (25 bp)
TGTTAGCACCGCTCTTTCTGAGGAG
LOC_Os02g05692
Os.17069.1.A1_at--509--8071Chr02:2794405..2794429 (25 bp)
GGAGCAATTTGTGAAATGCCTCAGA
LOC_Os02g05692
Os.17069.1.A1_at--275--2611Chr02:2794463..2794487 (25 bp)
AACGCGCAAGTTGTAGACGACATCA
LOC_Os02g05692
Os.17069.1.A1_at--389--1191Chr02:2795187..2795211 (25 bp)
AGTACCATGTGTGCTGCATTCACCA
LOC_Os02g05692
Os.17069.1.A1_at--361--4951Chr02:2795202..2795226 (25 bp)
GCATTCACCAGTGGCTCAGGCAGAA
LOC_Os02g05692
Os.17069.1.A1_at--312--2331Chr02:2795246..2795270 (25 bp)
AAAGCTTCAGCTGAACCTTCTACTG
LOC_Os02g05692
Os.17069.1.A1_at--819--2631Chr02:2795259..2795283 (25 bp)
AACCTTCTACTGTGAGCTAATCCCA
LOC_Os02g05692
Os.17069.1.A1_at--666--5911Chr02:2795272..2795296 (25 bp)
GAGCTAATCCCACCTGGGAGATTCA
LOC_Os02g05692
Os.17069.1.A1_at--472--3071Chr02:2795350..2795374 (25 bp)
AATAATCTTGACCTTGTTCACTCCA
LOC_Os02g05692
Os.17069.1.A1_at--575--8831Chr02:2795380..2795404 (25 bp)
TGATTATCAAATCAGCTGTGCTCTG
LOC_Os02g05692
Target Sequence 
TTTCACCTCCCATGATCAGCATAGTGACATGCGCATGGATATCGACAACATGTCCTATGAGGAATTATTAGCATTAGGAG
ACAGAATAGGCTCTGTTAGCACCGCTCTTTCTGAGGAGCAATTTGTGAAATGCCTCAGAAGAAGTATATATATACCAGTG
GCTACAAAAGCAAACGCGCAAGTTGTAGACGACATCAAATGCAGCATATGCCAGGAGGAGTACATAGAGGGTGAAGAAGT
TGGACGGCTGGGATGTGAGCATCAGTACCATGTGTGCTGCATTCACCAGTGGCTCAGGCAGAAGAACTGGTGTCCAATAT
GCAAAGCTTCAGCTGAACCTTCTACTGTGAGCTAATCCCACCTGGGAGATTCAAGCTTGTAAATATTTATCATGGATTTG
GTGTCCATCTTTTTGTGGAAACTGTAAATAATCTTGACCTTGTTCACTCCAATTTGTGATTATCAAATCAGCTGTGCTCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17069.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis