Browse Element(s) Details


Os.26998.1.S2_at

Description gb:AK060595.1
DB_XREF= gi:32970613
TID=Os.26998.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F08, full insert sequence.
FL= gb:AK100093.1 gb:AK060595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0566011/11ATP-dependent helicase DDX41, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05630Os.11634.1.S1_at11/112+2744268..2747426Protein phosphatase 2C containing protein, expressed
LOC_Os02g05640OsAffx.11905.1.S1_at10/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05640Os.49759.1.S1_x_at1/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05650NANA2+2760575..2761260expressed protein
LOC_Os02g05660Os.26998.1.S2_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05660Os.26998.1.S1_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05670Os.12734.1.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_x_at11/112+2772149..2774718expressed protein
LOC_Os02g05680Os.8799.1.S1_at11/112+2776405..2779344pyridine nucleotide-disulphide oxidoreductase family protein, putative, expressed
LOC_Os02g05686Os.25099.1.A1_at10/112+2786757..2789073expressed protein
LOC_Os02g05692Os.17069.1.A1_at11/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g05692OsAffx.5663.1.S1_at1/112+2791242..2795465Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26998.1.S2_at--284--5231Chr02:2766981..2767005 (25 bp)
GAATACCGCCAGTGTTGGCTGAGCT
LOC_Os02g05660
Os.26998.1.S2_at--522--10851Chr02:2766967..2766991 (25 bp)
TTGGCTGAGCTCAATGACCCATTGG
LOC_Os02g05660
Os.26998.1.S2_at--682--771Chr02:2766902..2766926 (25 bp)
ATGTGCATACTGTGGTGGTCTTGGC
LOC_Os02g05660
Os.26998.1.S2_at--1075--7471Chr02:2766888..2766912 (25 bp)
GTGGTCTTGGCCATCGTGTTACCGA
LOC_Os02g05660
Os.26998.1.S2_at--321--6811Chr02:2766873..2766897 (25 bp)
GTGTTACCGACTGTCCAAAGCTGGA
LOC_Os02g05660
Os.26998.1.S2_at--514--8071Chr02:2766851..2766875 (25 bp)
GGAGCACCAGAAGTCCATGGCGATC
LOC_Os02g05660
Os.26998.1.S2_at--375--9251Chr02:2766696..2766720 (25 bp)
TCCTCCGTAGCCATCTTGAAGAAAG
LOC_Os02g05660
Os.26998.1.S2_at--511--5571Chr02:2766676..2766700 (25 bp)
GAAAGATCTCCTGATACTACCTCAT
LOC_Os02g05660
Os.26998.1.S2_at--762--10431Chr02:2766641..2766665 (25 bp)
TTAGTGCTGCTGCTTCGTATGCAAT
LOC_Os02g05660
Os.26998.1.S2_at--689--4991Chr02:2766467..2766491 (25 bp)
GCAGTAACCAATGTGTTTCCGTTGT
LOC_Os02g05660
Os.26998.1.S2_at--754--6892Chr12:24795182..24795208 (23 bp)
GTATAATCTTACCATGCCTTCTGAA
NONE
Target Sequence 
GAATACCGCCAGTGTTGGCTGAGCTCAATGACCCATTGGAAGATGAGGAAACCATGGCCAAGGAGAGCGGTGTTAAGGGA
TGTGCATACTGTGGTGGTCTTGGCCATCGTGTTACCGACTGTCCAAAGCTGGAGCACCAGAAGTCCATGGCGATCGCGGG
CTCTAGAAGAGATTACTATGGCGGTGGAGGCTACAGAGGAGAAATATGATTGTTCTAGGAGAAATTCGTATGTTGCTATT
GTTTTATGGCNCCTAAGATACAACATTATAAGCACAAGCTGAAGCTCCTCCGTAGCCATCTTGAAGAAAGATCTCCTGAT
ACTACCTCATTGCATGGTTGTTAGTGCTGCTGCTTCGTATGCAATATATTGTTGTTAGATAGCATTANCCNCCNCACGGA
GAGGGGCTTGACATNTNTNCNANAGGGTGTTGACATGTTATGTTGTAAAATGTAACCTGGAGGCAATATTGAACGAGTAG
CATCTCTATCAAAANNNNGAGAGGGGGAGTATTTTAAGCAGTAACCAATGTGTTTCCGTTGTATAATCTTACCATGCCTT
CTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26998.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis