Browse Element(s) Details


Os.11634.1.S1_at

Description gb:CB682796
DB_XREF= gi:29686521
DB_XREF=OSJNEf10H14.r
CLONE=OSJNEf10H14
TID=Os.11634.1
CNT=56
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.11634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047F22, full insert sequence
FL= gb:AK066016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0563011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05600Os.56348.1.S1_at11/112+2722134..2725216expressed protein
LOC_Os02g05600OsAffx.24112.1.S1_at10/112+2722134..2725216expressed protein
LOC_Os02g05610Os.49956.1.S1_at11/112+2728846..2734452C2H2 zinc-finger protein, putative, expressed
LOC_Os02g05620Os.54339.1.S1_at11/112+2735910..2738355exocyst subunit EXO70 family protein, putative, expressed
LOC_Os02g05630Os.11634.1.S1_at11/112+2744268..2747426Protein phosphatase 2C containing protein, expressed
LOC_Os02g05640OsAffx.11905.1.S1_at10/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05640Os.49759.1.S1_x_at1/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05650NANA2+2760575..2761260expressed protein
LOC_Os02g05660Os.26998.1.S2_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05660Os.26998.1.S1_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05670Os.12734.1.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_x_at11/112+2772149..2774718expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11634.1.S1_at--883--5391Chr02:2746805..2746829 (25 bp)
GAAGCTGTTGACATGGTGAGGCCTA
LOC_Os02g05630
Os.11634.1.S1_at--403--131Chr02:2746829..2746853 (25 bp)
ATTCAGGATCCCGAACAGGCAGCGA
LOC_Os02g05630
Os.11634.1.S1_at--861--2791Chr02:2746853..2746877 (25 bp)
AAGAGGCTTCTCCAGGAGGCGTACC
LOC_Os02g05630
Os.11634.1.S1_at--619--6971Chr02:2746884..2746908 (25 bp)
GTAGCGCCGATAACATCACCGTTGT
LOC_Os02g05630
Os.11634.1.S1_at--176--391Chr02:2746898..2746922 (25 bp)
ATCACCGTTGTTATTGTCCGCTTTT
LOC_Os02g05630
Os.11634.1.S1_at--10--2431Chr02:2746974..2746998 (25 bp)
AAAACTCATAGTTTCTCCCAGGCAG
LOC_Os02g05630
Os.11634.1.S1_at--622--10792Chr02:2747008..2747032 (25 bp)
TTGTTCCTGTCTGTCATATCTGATG
LOC_Os02g05630
Os.11634.1.S1_at--1012--6911Chr02:2747039..2747063 (25 bp)
GTAGACGATTACAGTGGCGGCACCA
LOC_Os02g05630
Os.11634.1.S1_at--22--611Chr02:2747114..2747138 (25 bp)
ATGCTCCTGGCTGACCTTAGGTGGT
LOC_Os02g05630
Os.11634.1.S1_at--46--6391Chr02:2747199..2747223 (25 bp)
GATCGAAGGTGTATCGTGTCTTATA
LOC_Os02g05630
Os.11634.1.S1_at--692--3612Chr02:2747250..2747274 (25 bp)
CTTGTGTTCCATGCTAGGTCTTTTT
LOC_Os02g05630
Target Sequence 
GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAGAGGCTTCTCCAGGAGGCGTACCAAAGGGG
TAGCGCCGATAACATCACCGTTGTTATTGTCCGCTTTTTGGAGGGAACAACGACTGGTGGTGGACCAAGTAGGGAGGCCG
CCAGCGACCAAAACTCATAGTTTCTCCCAGGCAGCAGCATGGCTTGTTCCTGTCTGTCATATCTGATGCTCAAGGTAGAC
GATTACAGTGGCGGCACCACCCNACCATGCTGCCAAGAACTGACCCGGCCCGAATTTCGTCCTCGCTTTCATGCTCCTGG
CTGACCTTAGGTGGTGATGGTGGTGGTAATGTAGGAGCAGAATGGCGATGGGGCCAGTGTTGTTACATATGATATGATCG
AAGGTGTATCGTGTCTTATATATAACTTTGCAATGTAGATTCTATGCTTGTGTTCCATGCTAGGTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis