Browse Element(s) Details


Os.54339.1.S1_at

Description gb:AK103492.1
DB_XREF= gi:32988701
TID=Os.54339.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130O07, full insert sequence.
FL= gb:AK103492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0562011/11exocyst subunit EXO70 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05580OsAffx.32056.1.S1_at11/112+2708165..2711320transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05580OsAffx.32056.1.S1_x_at10/112+2708165..2711320transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05590OsAffx.24111.1.S1_at11/112+2712289..2712957Ribosome inactivating protein
LOC_Os02g05600Os.56348.1.S1_at11/112+2722134..2725216expressed protein
LOC_Os02g05600OsAffx.24112.1.S1_at10/112+2722134..2725216expressed protein
LOC_Os02g05610Os.49956.1.S1_at11/112+2728846..2734452C2H2 zinc-finger protein, putative, expressed
LOC_Os02g05620Os.54339.1.S1_at11/112+2735910..2738355exocyst subunit EXO70 family protein, putative, expressed
LOC_Os02g05630Os.11634.1.S1_at11/112+2744268..2747426Protein phosphatase 2C containing protein, expressed
LOC_Os02g05640OsAffx.11905.1.S1_at10/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05640Os.49759.1.S1_x_at1/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05650NANA2+2760575..2761260expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54339.1.S1_at--361--1451Chr02:2736464..2736488 (25 bp)
AGAAGATGCTCAGTGCGCTCTTCAT
LOC_Os02g05620
Os.54339.1.S1_at--1144--7631Chr02:2736420..2736444 (25 bp)
GGGAGCTTCCAAATCAGGCACACAA
LOC_Os02g05620
Os.54339.1.S1_at--727--6551Chr02:2736388..2736412 (25 bp)
GATTACCAGTGCGATGACAGGCTTT
LOC_Os02g05620
Os.54339.1.S1_at--1155--5651Chr02:2736373..2736397 (25 bp)
GACAGGCTTTTATCGGAGTGCTTCT
LOC_Os02g05620
Os.54339.1.S1_at--162--7311Chr02:2736356..2736380 (25 bp)
GTGCTTCTACAGTGAAATAGCTTTG
LOC_Os02g05620
Os.54339.1.S1_at--580--9211Chr02:2736245..2736269 (25 bp)
TCCACACTGGACGTGAGGCCCAATA
LOC_Os02g05620
Os.54339.1.S1_at--119--7311Chr02:2736128..2736152 (25 bp)
GTGCGTAATTGGGACATTTCCTACT
LOC_Os02g05620
Os.54339.1.S1_at--1112--10391Chr02:2736074..2736098 (25 bp)
TTATTGTCCCTATCACCATAACCAT
LOC_Os02g05620
Os.54339.1.S1_at--655--11Chr02:2735988..2736012 (25 bp)
ATTGGTTTCATTTTAGGTGGGCTGT
LOC_Os02g05620
Os.54339.1.S1_at--899--7731Chr02:2735973..2735997 (25 bp)
GGTGGGCTGTAGACATTTATTTTAT
LOC_Os02g05620
Os.54339.1.S1_at--1001--1951Chr02:2735930..2735954 (25 bp)
ACTGAGCTTCGATATGCAATGTATT
LOC_Os02g05620
Target Sequence 
AGAAGATGCTCAGTGCGCTCTTCATTCCCCGGCCCAGGAGGNCTGGGAGCTTCCAAATCAGGCACACAAATGACAAGATT
ACCAGTGCGATGACAGGCTTTTATCGGAGTGCTTCTACAGTGAAATAGCTTTGGTTGAAGAACCANANTGGNTTGGNTTC
TACTATTTATGCAATAATGGGATATGTNACNATGATTCATTTTCGGCCAGTCNAGCAAATTNGCNTCCACACTGGACGTG
AGGCCCAATANTGAACCTGTGATGAGAATATTGGTGGCATATGAACATAGGNNCTTCTATAGTTCTCATGGTGAAGGTGA
ACAGAAGATGGTGGGGGACAATGTGCGTAATTGGGACATTTCCTACTTATCANATGTCTTCCCTTCTGNTATTATGTTAT
TGTCCCTATCACCATAACCATNCATNTAGAAACTTCTGTGGGGACATGTTGATATTTAATCAGCTGTGTAGTGTATGTAA
AAATTGGTTTCATTTTAGGTGGGCTGTAGACATTTATTTTATATGTTCAATNTGCTACANACTGAGCTTCGATATGCAAT
GTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis