Browse Element(s) Details


OsAffx.24111.1.S1_at

Description tigr:9630.m00482
TID=OsAffx.24111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0559011/11Ribosome inactivating protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05560NANA2+2695687..2700301retrotransposon protein, putative, unclassified
LOC_Os02g05570OsAffx.10637.3.S1_s_at11/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05570OsAffx.10637.1.S1_s_at11/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05570OsAffx.10637.4.S1_s_at8/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05580OsAffx.32056.1.S1_at11/112+2708165..2711320transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05580OsAffx.32056.1.S1_x_at10/112+2708165..2711320transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05590OsAffx.24111.1.S1_at11/112+2712289..2712957Ribosome inactivating protein
LOC_Os02g05600Os.56348.1.S1_at11/112+2722134..2725216expressed protein
LOC_Os02g05600OsAffx.24112.1.S1_at10/112+2722134..2725216expressed protein
LOC_Os02g05610Os.49956.1.S1_at11/112+2728846..2734452C2H2 zinc-finger protein, putative, expressed
LOC_Os02g05620Os.54339.1.S1_at11/112+2735910..2738355exocyst subunit EXO70 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24111.1.S1_at--576--1071Chr02:2712373..2712397 (25 bp)
AGGGACGCCGGATCACATGTAGAGA
LOC_Os02g05590
OsAffx.24111.1.S1_at--195--6191Chr02:2712402..2712426 (25 bp)
GAGGACGACATTAGCAATTGCCGAT
LOC_Os02g05590
OsAffx.24111.1.S1_at--1077--2071Chr02:2712437..2712461 (25 bp)
ACATTCTTGGTTTCGCTAATCGCAC
LOC_Os02g05590
OsAffx.24111.1.S1_at--131--10351Chr02:2712495..2712519 (25 bp)
TTTACCAGAACCACTCACGAAGCTA
LOC_Os02g05590
OsAffx.24111.1.S1_at--633--3571Chr02:2712529..2712553 (25 bp)
CATAGCTATGGCGACCTGGTTGGTA
LOC_Os02g05590
OsAffx.24111.1.S1_at--747--10051Chr02:2712552..2712576 (25 bp)
TAGTTTCCAGAATCTCCACACAGTT
LOC_Os02g05590
OsAffx.24111.1.S1_at--152--5391Chr02:2712643..2712667 (25 bp)
GAAGCACAACTCAAACTGCCGATTG
LOC_Os02g05590
OsAffx.24111.1.S1_at--829--9171Chr02:2712659..2712683 (25 bp)
TGCCGATTGCCAAGTTTGCGATCAT
LOC_Os02g05590
OsAffx.24111.1.S1_at--1138--9131Chr02:2712698..2712722 (25 bp)
TGCGGTTCCCTTTCATCAGGAATAC
LOC_Os02g05590
OsAffx.24111.1.S1_at--383--5991Chr02:2712745..2712769 (25 bp)
GAGACCTTCATGAAGCCGGACCATG
LOC_Os02g05590
OsAffx.24111.1.S1_at--904--331Chr02:2712833..2712857 (25 bp)
ATAATTGGTGGCCACGTCCAGACAG
LOC_Os02g05590
Target Sequence 
AGGGACGCCGGATCACATGTAGAGATGATGAGGACGACATTAGCAATTGCCGATGACGATCTATACATTCTTGGTTTCGC
TAATCGCACCGGCCATTGGCACGTCATGAAAGATTTTGGAGGTTTACCAGAACCACTCACGAAGCTAACGATTGAACATA
GCTATGGCGACCTGGTTGGTAGTTTCCAGAATCTCCACACAGTTCCTCTGGGAAGGGAGTCCGCCGTACAAGCCGTCAGA
ACACTTGCAAACTACAACAGCGCCATGGCCGAAGCACAACTCAAACTGCCGATTGCCAAGTTTGCGATCATGATATCTGA
AGCCCTGCGGTTCCCTTTCATCAGGAATACGTTCAGTACAAATTGGGAGAGCGAGACCTTCATGAAGCCGGACCATGTGA
AATACGTGGTTTATTGGGGACGGCTCTCTAAGGCCCTAGTGTGGTGGAAGCAAAGTGGAAATAATTGGTGGCCACGTCCA
GACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis