Browse Element(s) Details


OsAffx.11905.1.S1_at

Description tigr:9630.m00489
TID=OsAffx.11905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to homeobox protein HAT14 (imported) - Arabidopsis thaliana (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0564010/11Homeobox domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05610Os.49956.1.S1_at11/112+2728846..2734452C2H2 zinc-finger protein, putative, expressed
LOC_Os02g05620Os.54339.1.S1_at11/112+2735910..2738355exocyst subunit EXO70 family protein, putative, expressed
LOC_Os02g05630Os.11634.1.S1_at11/112+2744268..2747426Protein phosphatase 2C containing protein, expressed
LOC_Os02g05640OsAffx.11905.1.S1_at10/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05640Os.49759.1.S1_x_at1/112+2757691..2758712Homeobox domain containing protein
LOC_Os02g05650NANA2+2760575..2761260expressed protein
LOC_Os02g05660Os.26998.1.S2_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05660Os.26998.1.S1_at11/112+2766215..2770010ATP-dependent helicase DDX41, putative, expressed
LOC_Os02g05670Os.12734.1.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_at11/112+2772149..2774718expressed protein
LOC_Os02g05670OsAffx.24114.2.S1_x_at11/112+2772149..2774718expressed protein
LOC_Os02g05680Os.8799.1.S1_at11/112+2776405..2779344pyridine nucleotide-disulphide oxidoreductase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11905.1.S1_at--116--8631Chr02:2757827..2757851 (25 bp)
TGGTGGCTGCTGGGAAGCGAGGCCG
LOC_Os02g05640
OsAffx.11905.1.S1_at--516--911Chr02:2757866..2757890 (25 bp)
AGGCTGAGGCTGAAGCTACGACGAC
LOC_Os02g05640
OsAffx.11905.1.S1_at--327--4731Chr02:2757868..2757892 (25 bp)
GCTGAGGCTGAAGCTACGACGACGA
LOC_Os02g05640
OsAffx.11905.1.S1_at--671--5291Chr02:2757991..2758015 (25 bp)
GAAGGCGCGAGCAGGAAGAAGCTCC
LOC_Os02g05640
OsAffx.11905.1.S1_at--918--871Chr02:2758031..2758055 (25 bp)
AGGCCACGCTTCTCGAGGACAGCTT
LOC_Os02g05640
OsAffx.11905.1.S1_at--918--8431Chr02:2758032..2758056 (25 bp)
GGCCACGCTTCTCGAGGACAGCTTC
LOC_Os02g05640
OsAffx.11905.1.S1_at--1112--2191Chr02:2758064..2758396 (25 bp)
ACAACATCCTCTCCCATGCGGAGAA
LOC_Os02g05640
OsAffx.11905.1.S1_at--1096--2491Chr02:2758066..2758398 (25 bp)
AACATCCTCTCCCATGCGGAGAAGC
LOC_Os02g05640
OsAffx.11905.1.S1_at--447--571NONE
ATCCTCTCCCATGCGGAGAAGCAGG
NONE
OsAffx.11905.1.S1_at--85--3811Chr02:2758074..2758406 (25 bp)
CTCCCATGCGGAGAAGCAGGAGCTG
LOC_Os02g05640
OsAffx.11905.1.S1_at--1073--1391Chr02:2758483..2758507 (25 bp)
AGACGGAGGCCGACTGCGACCTGCT
LOC_Os02g05640
Target Sequence 
TGGTGGCTGCTGGGAAGCGAGGCCGAGAGCAGAGGGGTGAGGCTGAGGCTGAAGCTACGACGACGAGGCAGCGGCGGAGC
TGCAAGAAGGGCAGGAGGGGGAGGGGAGACGACGATGACGACGACGGTGATCGCCGGAGCCCGAGCGGCGGCGGCGGTGA
CGAGGAAGGCGCGAGCAGGAAGAAGCTCCGGCTCACCGGCGAGCAGGCCACGCTTCTCGAGGACAGCTTCCGCGCCCACA
ACATCCTCTCCCATGCGGAGAAGCAGGAGCTGGCGGGGAAGCTGGGGCTGAGCGCGAGGCAGGTGGAGGTGTGGTTCCAG
AACAGGAGGGCGAGGACGAAGCTGAAGCAGACGGAGGCCGACTGCGACCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis