Browse Element(s) Details


OsAffx.11908.1.S1_at

Description tigr:9630.m00500
TID=OsAffx.11908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cellulase (EC 3.2.1.4) T21L14.7 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0574410/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05700OsAffx.11906.1.S1_at11/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05700Os.47399.1.A1_at3/112+2798816..2803569ZEITLUPE, putative, expressed
LOC_Os02g05710Os.8141.1.S1_at11/112+2804122..2807633expressed protein
LOC_Os02g05720OsAffx.11907.1.S1_at11/112+2812235..2816191PPR986-12, putative, expressed
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed
LOC_Os02g05744OsAffx.11908.1.S1_at10/112+2824486..2830255Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g05760OsAffx.31174.4.S1_x_at2/112+2833224..2836631hypothetical protein
LOC_Os02g05760OsAffx.31174.5.S1_x_at1/112+2833224..2836631hypothetical protein
LOC_Os02g05770Os.12925.1.S1_at11/112+2838177..2842546expressed protein
LOC_Os02g05780OsAffx.24117.1.S1_at10/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.46673.1.S1_x_at7/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.49252.1.S1_x_at1/112+2842900..2847426hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11908.1.S1_at--698--8131Chr02:2828221..2828245 (25 bp)
GGACATCAAGTACGCCGGACTCCAA
LOC_Os02g05744
OsAffx.11908.1.S1_at--496--2851NONE
AAGTCCTCGCTTCCAAGGAGATGGC
NONE
OsAffx.11908.1.S1_at--462--9831Chr02:2827588..2827612 (25 bp)
TAAATTGACACCCTCTTCTTGGCTG
LOC_Os02g05744
OsAffx.11908.1.S1_at--560--3611Chr02:2827571..2827595 (25 bp)
CTTGGCTGACCTACTCTGATGTGGA
LOC_Os02g05744
OsAffx.11908.1.S1_at--913--6591Chr02:2827532..2827556 (25 bp)
GATTGTGTAACTGCAAGAAGCCCTG
LOC_Os02g05744
OsAffx.11908.1.S1_at--888--5411Chr02:2827516..2827540 (25 bp)
GAAGCCCTGCAAACTAGAGCCATTG
LOC_Os02g05744
OsAffx.11908.1.S1_at--359--871Chr02:2827474..2827498 (25 bp)
AGGCTGTTTGGTGCAAAGGCCCTTT
LOC_Os02g05744
OsAffx.11908.1.S1_at--1072--6711Chr02:2827444..2827468 (25 bp)
GTTCTGGCTTACAAGCATACTAGCT
LOC_Os02g05744
OsAffx.11908.1.S1_at--805--3711Chr02:2827425..2827449 (25 bp)
CTAGCTAGAGCTACCATGGCTTTGC
LOC_Os02g05744
OsAffx.11908.1.S1_at--1009--3491Chr02:2827411..2827435 (25 bp)
CATGGCTTTGCTTGTGTTGGGAGTT
LOC_Os02g05744
OsAffx.11908.1.S1_at--14--7511Chr02:2827381..2827405 (25 bp)
GTGGATGGATGCACCACCATGCAAT
LOC_Os02g05744
Target Sequence 
GGACATCAAGTACGCCGGACTCCAAGTCCTCGCTTCCAAGGAGATGGCTAAATTGACACCCTCTTCTTGGCTGACCTACT
CTGATGTGGATGGACTGAAAAAAAGATTGTGTAACTGCAAGAAGCCCTGCAAACTAGAGCCATTGGAGTTGCATGAGGAG
CAAGGCTGTTTGGTGCAAAGGCCCTTTTGCTTGTTCTGGCTTACAAGCATACTAGCTAGAGCTACCATGGCTTTGCTTGT
GTTGGGAGTTGATGCGTGGATGGATGCACCACCATGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis