Browse Element(s) Details


Os.46673.1.S1_x_at

Description gb:NM_196741.1
DB_XREF= gi:37534841
TID=Os.46673.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0094K20.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094K20.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g057807/11hypothetical protein
LOC_Os10g309703/11expressed protein
LOC_Os05g498001/11Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os10g421901/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05730OsAffx.24115.1.S1_at6/112+2816878..2824086Protein kinase domain containing protein, expressed
LOC_Os02g05744OsAffx.11908.1.S1_at10/112+2824486..2830255Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g05760OsAffx.31174.4.S1_x_at2/112+2833224..2836631hypothetical protein
LOC_Os02g05760OsAffx.31174.5.S1_x_at1/112+2833224..2836631hypothetical protein
LOC_Os02g05770Os.12925.1.S1_at11/112+2838177..2842546expressed protein
LOC_Os02g05780OsAffx.24117.1.S1_at10/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.46673.1.S1_x_at7/112+2842900..2847426hypothetical protein
LOC_Os02g05780Os.49252.1.S1_x_at1/112+2842900..2847426hypothetical protein
LOC_Os02g05790Os.54322.1.S1_x_at10/112+2858631..2861703hypothetical protein
LOC_Os02g05800OsAffx.11909.1.S1_at11/112+2863335..2864534hypothetical protein
LOC_Os02g05810Os.34785.1.S1_a_at11/112+2865052..2869029expressed protein
LOC_Os02g05820Os.52804.1.S1_at11/112+2869692..2874060Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004455molecular_functionketol-acid reductoisomerase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46673.1.S1_x_at--497--1052Chr02:2844757..2844781 (25 bp)
AGGTGTGATTCATGCTTGTCAGTGC
LOC_Os02g05780
Os.46673.1.S1_x_at--337--4931NONE
GCTTGTCAGTGCTGGCTGTGGTCCA
NONE
Os.46673.1.S1_x_at--802--7611Chr02:2846347..2846371 (25 bp)
GGGAAGCTTCTGGACCTTGCTCTTC
LOC_Os02g05780
Os.46673.1.S1_x_at--1079--3751Chr02:2846366..2846390 (25 bp)
CTCTTCTCACTGTTTGGTTGTTGCA
LOC_Os02g05780
Os.46673.1.S1_x_at--1162--2531Chr02:2846421..2846445 (25 bp)
AACTCAAGCATTTCATCTGTATGCA
LOC_Os02g05780
Os.46673.1.S1_x_at--1147--8813Chr10:22363883..22363907 (25 bp)
TGTTGTGAATTACTCAGGTCTGCAA
LOC_Os10g42190
Os.46673.1.S1_x_at--755--8733Chr09:16062909..16062933 (25 bp)
TGTAATTTTGTCATGAACCTGTTCC
NONE
Os.46673.1.S1_x_at--899--4754Chr09:16062935..16062959 (25 bp)
GCTGCTTCCCGAGGCGTTCAAGGGC
NONE
Os.46673.1.S1_x_at--463--2451NONE
AACAAGGAATCTGGCAAAGTTTGCT
NONE
Os.46673.1.S1_x_at--1115--10711Chr10:15832026..15832050 (25 bp)
TTGCTACAGGACATCACACTTGTGT
LOC_Os10g30970
Os.46673.1.S1_x_at--279--33110Chr12:21167091..21167110 (20 bp)
CACACTTGTGTGGTTTTAGCTCAGG
NONE
Target Sequence 
AGGTGTGATTCATGCTTGTCAGTGCTGGCTGTGGTCCAGTATATGAATGATTTGAATGCTGTAAGAGGAACAAACCAGAA
GAAAACAGATCGGGGAAGCTTCTGGACCTTGCTCTTCTCACTGTTTGGTTGTTGCAAAAAGGACCAAGAACTGGGATTGC
CAGTATAACTCAAGCATTTCATCTGTATGCATGTTGTGAATTACTCAGGTCTGCAAAGAAAGGAAACGTGGGTAATTTGG
TTCCTCTTCTTTTTTTGGCTTCCTTTTTTTTGTGTATATATGTAATTTTGTCATGAACCTGTTCCCGCTGCTTCCCGAGG
CGTTCAAGGGCAATAAGCAAATCGGAGTGATCGGATGGGGCTCTCAGGGGCCTGCACAAGCCCAGAANCTGAGGGATTCA
ATAGCTCAAGTGAAGTCNGACNTTGTTGTTAAGNTNNNTCNCNNGANANNNNNNNNGNNNNTNNANGNNNNNNNNNNNNN
NAGAAGAACAAGGAATCTGGCAAAGTTTGCTACAGGACATCACACTTGTGTGGTTTTAGCTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46673.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis