Browse Element(s) Details


Os.49252.1.S1_x_at

Description gb:AK069129.1
DB_XREF= gi:32979153
TID=Os.49252.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007E02, full insert sequence.
FL= gb:AK069129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g421901/11Leucine Rich Repeat family protein, expressed
LOC_Os10g309801/11hypothetical protein
LOC_Os02g057801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42196Os.23268.1.S1_at11/1110+22369432..22377421expressed protein
LOC_Os10g42196Os.23268.1.S2_at11/1110+22369432..22377421expressed protein
LOC_Os10g42202NANA10+22384303..22389591hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004455molecular_functionketol-acid reductoisomerase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49252.1.S1_x_at--1087--7512Chr09:16059027..16059051 (25 bp)
GTGGAGCTCGCAGCCATACGTGTCG
NONE
Os.49252.1.S1_x_at--363--7291Chr09:16059051..16059233 (25 bp)
GTGCCGCACGACATCTCTGCAAGAG
NONE
Os.49252.1.S1_x_at--601--2771Chr09:16059229..16059253 (25 bp)
AAGAGCTCACCAGGCTTGGGATAAA
NONE
Os.49252.1.S1_x_at--344--8051Chr09:16059260..16059284 (25 bp)
GGAGAACCTGGTGATTCCGAGTGTC
NONE
Os.49252.1.S1_x_at--140--8291Chr09:16059740..16059764 (25 bp)
GGCTTTTTGGTTCCTTACTTGATTG
NONE
Os.49252.1.S1_x_at--768--2712Chr09:16059796..16060085 (25 bp)
AAGCATTTCACCAGGTCTTCTGCAA
NONE
Os.49252.1.S1_x_at--788--7652Chr09:16061013..16061037 (25 bp)
GGGATAGTTCTCTCGTGTTGCACTC
NONE
Os.49252.1.S1_x_at--404--6674Chr09:16061029..16061053 (25 bp)
GTTGCACTCCAGGTGTTTGTAGTTT
NONE
Os.49252.1.S1_x_at--450--2793Chr09:16061064..16061088 (25 bp)
AAGAGTAGTTTCAGTTCTGCTCCAT
NONE
Os.49252.1.S1_x_at--1042--6551Chr09:16061132..16061153 (22 bp)
GATTCATGCTTGTCAGTACTGGCTG
NONE
Os.49252.1.S1_x_at--632--3653Chr10:22363802..22363826 (25 bp)
CTTCTCGCTGTTTGGTTGTTGCAAA
LOC_Os10g42190
Target Sequence 
GTGGAGCTCGCAGCCATACGTGTCGTGCCGCACGACATCTCTGCAAGAGCTCACCAGGCTTGGGATAAAGCACGTGGAGA
ACCTGGTGATTCCGAGTGTCAGAAATGATGATTGGGGCTTTTTGGTTCCTTACTTGATTGGAAGCATCTCATTGATAGTA
TTAGCTATCGGAAGCATTTCACCAGGTCTTCTGCAAGCAGCAATTGGCGCATTTTTAACTGTTTTTCCTGACTATCAAGA
CAGAGTTGCTAGGCATGAAGCTGCTCATTTTTTGGGGATAGTTCTCTCGTGTTGCACTCCAGGTGTTTGTAGTTTTGCCT
TACGGAAGAGTAGTTTCAGTTCTGCTCCATGGCTTGCAGTGGTTGATTACTAGGGGTTGATCACTAGAGGTGTGATTCAT
GCTTGTCAGTACTGGCTGTGGTCCAGTATATGAATGATTTGAATGCTGTAAGAGGAACAAACCAGAAGAAAACAGATCGG
GGAAGCTTCTGGACCTGGCTCTTCTCGCTGTTTGGTTGTTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49252.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis